RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 HIST1H1EP10412 219 aaKnown RBP16.79■□□□□ 0.28
CTCF-202ENST00000401394 S100A7P31151 101 aa16.79■□□□□ 0.28
CTCF-202ENST00000401394 KLF5Q13887 457 aaPredicted RBP16.79■□□□□ 0.28
CTCF-202ENST00000401394 IGLV3-9A0A075B6K5 115 aa16.79■□□□□ 0.28
CTCF-202ENST00000401394 SYS1-DBNDD2H3BUS1 97 aa16.79■□□□□ 0.28
CTCF-202ENST00000401394 ITGB1BP1O14713 200 aa16.79■□□□□ 0.28
CTCF-202ENST00000401394 HBBP68871 147 aa16.79■□□□□ 0.28
CTCF-202ENST00000401394 MRGPRG-AS1Q2M3A8 158 aa16.79■□□□□ 0.28
CTCF-202ENST00000401394 OR4C5Q8NGB2 326 aa16.79■□□□□ 0.28
CTCF-202ENST00000401394 FAM231DQ6ZW35 169 aa16.78■□□□□ 0.28
CTCF-202ENST00000401394 TMUB1Q9BVT8 246 aa16.78■□□□□ 0.28
CTCF-202ENST00000401394 LEPROTL1O95214 131 aa16.78■□□□□ 0.28
CTCF-202ENST00000401394 COX19Q49B96 90 aa16.78■□□□□ 0.28
CTCF-202ENST00000401394 PLA2G2CQ5R387 149 aa16.78■□□□□ 0.28
CTCF-202ENST00000401394 PRNTQ86SH4 94 aa16.78■□□□□ 0.28
CTCF-202ENST00000401394 OR5AN1Q8NGI8 311 aa16.78■□□□□ 0.28
CTCF-202ENST00000401394 NAA38Q9BRA0 125 aaKnown RBP16.78■□□□□ 0.28
CTCF-202ENST00000401394 RPP21Q9H633 154 aaKnown RBP16.78■□□□□ 0.28
CTCF-202ENST00000401394 NCR2O95944 276 aa16.77■□□□□ 0.28
CTCF-202ENST00000401394 P01737 135 aa16.77■□□□□ 0.28
CTCF-202ENST00000401394 PSG1P11464 419 aa16.77■□□□□ 0.28
CTCF-202ENST00000401394 C19orf24Q9BVV8 132 aa16.77■□□□□ 0.28
CTCF-202ENST00000401394 Q9H3A6 140 aa16.77■□□□□ 0.28
CTCF-202ENST00000401394 OR2J3O76001 311 aa16.77■□□□□ 0.28
CTCF-202ENST00000401394 CACNG8Q8WXS5 425 aa16.77■□□□□ 0.28
CTCF-202ENST00000401394 GPR82Q96P67 336 aa16.77■□□□□ 0.28
CTCF-202ENST00000401394 TRAV17A0A0B4J275 112 aa16.77■□□□□ 0.27
CTCF-202ENST00000401394 ZNF785A8K8V0 405 aa16.77■□□□□ 0.27
CTCF-202ENST00000401394 TNFSF4P23510 183 aa16.77■□□□□ 0.27
CTCF-202ENST00000401394 OSR1Q8TAX0 266 aaPredicted RBP16.77■□□□□ 0.27
CTCF-202ENST00000401394 MLST8Q9BVC4 326 aa16.77■□□□□ 0.27
CTCF-202ENST00000401394 IGHV1-69-2A0A0G2JMI3 117 aa16.76■□□□□ 0.27
CTCF-202ENST00000401394 GOLT1AQ6ZVE7 132 aa16.76■□□□□ 0.27
CTCF-202ENST00000401394 TMEM116Q8NCL8 245 aa16.76■□□□□ 0.27
CTCF-202ENST00000401394 SSUH2Q9Y2M2 353 aa16.76■□□□□ 0.27
CTCF-202ENST00000401394 TAX1BP3O14907 124 aa16.76■□□□□ 0.27
CTCF-202ENST00000401394 TOMM40O96008 361 aa16.76■□□□□ 0.27
CTCF-202ENST00000401394 BPIFB3P59826 476 aa16.75■□□□□ 0.27
CTCF-202ENST00000401394 LYZP61626 148 aa16.75■□□□□ 0.27
CTCF-202ENST00000401394 TIMM23BQ5SRD1 257 aa16.75■□□□□ 0.27
CTCF-202ENST00000401394 BCL6BQ8N143 479 aaPredicted RBP16.75■□□□□ 0.27
CTCF-202ENST00000401394 WFDC8Q8IUA0 241 aa16.75■□□□□ 0.27
CTCF-202ENST00000401394 OR4C13Q8NGP0 309 aa16.75■□□□□ 0.27
CTCF-202ENST00000401394 OR1L4Q8NGR5 311 aa16.75■□□□□ 0.27
CTCF-202ENST00000401394 LOXL1Q08397 574 aaPredicted RBP16.74■□□□□ 0.27
CTCF-202ENST00000401394 AMMECR1LQ6DCA0 310 aa16.74■□□□□ 0.27
CTCF-202ENST00000401394 DEFB124Q8NES8 71 aa16.74■□□□□ 0.27
CTCF-202ENST00000401394 C22orf15Q8WYQ4 148 aa16.74■□□□□ 0.27
CTCF-202ENST00000401394 CTSZQ9UBR2 303 aa16.74■□□□□ 0.27
CTCF-202ENST00000401394 TCRAP04437 139 aa16.74■□□□□ 0.27
CTCF-202ENST00000401394 CD40P25942 277 aa16.74■□□□□ 0.27
CTCF-202ENST00000401394 GATA4P43694 442 aa16.74■□□□□ 0.27
CTCF-202ENST00000401394 LINC00312Q9Y6C7 94 aa16.74■□□□□ 0.27
CTCF-202ENST00000401394 TMEM167AQ8TBQ9 72 aa16.74■□□□□ 0.27
CTCF-202ENST00000401394 TMSB15BA0A087X1C1 80 aa16.73■□□□□ 0.27
CTCF-202ENST00000401394 IGHV2-70DA0A0C4DH43 119 aa16.73■□□□□ 0.27
CTCF-202ENST00000401394 ARMS2P0C7Q2 107 aa16.73■□□□□ 0.27
CTCF-202ENST00000401394 COL8A1P27658 744 aa16.73■□□□□ 0.27
CTCF-202ENST00000401394 LDLRAD2Q5SZI1 272 aa16.73■□□□□ 0.27
CTCF-202ENST00000401394 BVES-AS1Q5T3Y7 98 aa16.73■□□□□ 0.27
CTCF-202ENST00000401394 PRSS22Q9GZN4 317 aa16.73■□□□□ 0.27
CTCF-202ENST00000401394 SPTA1P02549 2419 aa16.73■□□□□ 0.27
CTCF-202ENST00000401394 LOC389332A0A1B0GUA5 103 aa16.72■□□□□ 0.27
CTCF-202ENST00000401394 CHEK1O14757 476 aa16.72■□□□□ 0.27
CTCF-202ENST00000401394 GP9P14770 177 aa16.72■□□□□ 0.27
CTCF-202ENST00000401394 PRSS33Q8NF86 280 aa16.72■□□□□ 0.27
CTCF-202ENST00000401394 C19orf71A6NCJ1 209 aa16.72■□□□□ 0.27
CTCF-202ENST00000401394 LYNX1G3V0Z9 82 aa16.72■□□□□ 0.27
CTCF-202ENST00000401394 LYNX1P0DP58 116 aa16.72■□□□□ 0.27
CTCF-202ENST00000401394 DAZAP1Q96EP5 407 aaKnown RBP16.72■□□□□ 0.27
CTCF-202ENST00000401394 MBD3L4A6NDZ8 208 aaPredicted RBP16.71■□□□□ 0.27
CTCF-202ENST00000401394 MBD3L3A6NE82 208 aaPredicted RBP16.71■□□□□ 0.27
CTCF-202ENST00000401394 MBD3L5A6NJ08 208 aaPredicted RBP16.71■□□□□ 0.27
CTCF-202ENST00000401394 MBD3L2Q8NHZ7 208 aaPredicted RBP16.71■□□□□ 0.27
CTCF-202ENST00000401394 UQCRFS1P47985 274 aa16.71■□□□□ 0.27
CTCF-202ENST00000401394 ZADH2Q8N4Q0 377 aa16.71■□□□□ 0.27
CTCF-202ENST00000401394 LTAP01374 205 aa16.71■□□□□ 0.26
CTCF-202ENST00000401394 PERPQ96FX8 193 aa16.71■□□□□ 0.26
CTCF-202ENST00000401394 LINC00574Q9H8X3 128 aa16.71■□□□□ 0.26
CTCF-202ENST00000401394 PTPRZ1P23471 2315 aaPredicted RBP16.71■□□□□ 0.26
CTCF-202ENST00000401394 M0R3E3 92 aa16.7■□□□□ 0.26
CTCF-202ENST00000401394 OVOL3O00110 214 aa16.7■□□□□ 0.26
CTCF-202ENST00000401394 RASL11AQ6T310 242 aa16.7■□□□□ 0.26
CTCF-202ENST00000401394 WFDC3Q8IUB2 231 aa16.7■□□□□ 0.26
CTCF-202ENST00000401394 THAP8Q8NA92 274 aa16.7■□□□□ 0.26
CTCF-202ENST00000401394 SRSF12Q8WXF0 261 aaKnown RBP16.7■□□□□ 0.26
CTCF-202ENST00000401394 TRAV8-6A0A0B4J262 113 aa16.7■□□□□ 0.26
CTCF-202ENST00000401394 A8MWL6 223 aa16.7■□□□□ 0.26
CTCF-202ENST00000401394 KLF12Q9Y4X4 402 aa16.7■□□□□ 0.26
CTCF-202ENST00000401394 CEP295Q9C0D2 2601 aa16.69■□□□□ 0.26
CTCF-202ENST00000401394 GAL3ST2Q9H3Q3 398 aa16.69■□□□□ 0.26
CTCF-202ENST00000401394 TM4SF5O14894 197 aa16.69■□□□□ 0.26
CTCF-202ENST00000401394 IGLV2-11P01706 119 aa16.69■□□□□ 0.26
CTCF-202ENST00000401394 KLF17Q5JT82 389 aaPredicted RBP16.69■□□□□ 0.26
CTCF-202ENST00000401394 RBP4P02753 201 aa16.68■□□□□ 0.26
CTCF-202ENST00000401394 TNFRSF1AP19438 455 aa16.68■□□□□ 0.26
CTCF-202ENST00000401394 HTR1DP28221 377 aa16.68■□□□□ 0.26
CTCF-202ENST00000401394 ADIPOQQ15848 244 aa16.68■□□□□ 0.26
CTCF-202ENST00000401394 SLC25A34Q6PIV7 304 aa16.68■□□□□ 0.26
CTCF-202ENST00000401394 RBPMS2Q6ZRY4 209 aaKnown RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms