RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 RNF125Q96EQ8 232 aa20.95■□□□□ 0.94
HMGB1-205ENST00000399494 SSNA1O43805 119 aa20.94■□□□□ 0.94
HMGB1-205ENST00000399494 CCNKO75909 580 aa20.94■□□□□ 0.94
HMGB1-205ENST00000399494 P2RY1P47900 373 aa20.94■□□□□ 0.94
HMGB1-205ENST00000399494 RRAS2P62070 204 aaPredicted RBP20.94■□□□□ 0.94
HMGB1-205ENST00000399494 OR2F1Q13607 317 aa20.94■□□□□ 0.94
HMGB1-205ENST00000399494 FAM90A2PQ658T7 463 aa20.94■□□□□ 0.94
HMGB1-205ENST00000399494 APRG1Q8IVJ8 170 aa20.94■□□□□ 0.94
HMGB1-205ENST00000399494 LILRB2Q8N423 598 aa20.94■□□□□ 0.94
HMGB1-205ENST00000399494 MGAT4CQ9UBM8 478 aa20.94■□□□□ 0.94
HMGB1-205ENST00000399494 PMS2P5A8MQ11 134 aa20.93■□□□□ 0.94
HMGB1-205ENST00000399494 DNASE2O00115 360 aaPredicted RBP20.93■□□□□ 0.94
HMGB1-205ENST00000399494 SIX6O95475 246 aa20.93■□□□□ 0.94
HMGB1-205ENST00000399494 PTTG1O95997 202 aa20.93■□□□□ 0.94
HMGB1-205ENST00000399494 CAV2P51636 162 aa20.93■□□□□ 0.94
HMGB1-205ENST00000399494 LYZP61626 148 aa20.93■□□□□ 0.94
HMGB1-205ENST00000399494 RAB32Q13637 225 aa20.93■□□□□ 0.94
HMGB1-205ENST00000399494 IGKV1OR2-108A0A075B7D4 117 aa20.92■□□□□ 0.94
HMGB1-205ENST00000399494 EIF2B2P49770 351 aaKnown RBP20.92■□□□□ 0.94
HMGB1-205ENST00000399494 DLK1P80370 383 aa20.92■□□□□ 0.94
HMGB1-205ENST00000399494 LGALS9CQ6DKI2 356 aa20.92■□□□□ 0.94
HMGB1-205ENST00000399494 PFDN2Q9UHV9 154 aa20.92■□□□□ 0.94
HMGB1-205ENST00000399494 ZNF124Q15973 351 aa20.91■□□□□ 0.94
HMGB1-205ENST00000399494 TMEM144Q7Z5S9 345 aa20.91■□□□□ 0.94
HMGB1-205ENST00000399494 CSTL1Q9H114 145 aa20.91■□□□□ 0.94
HMGB1-205ENST00000399494 DEDDO75618 318 aa20.9■□□□□ 0.94
HMGB1-205ENST00000399494 NUP62P37198 522 aaPredicted RBP20.9■□□□□ 0.94
HMGB1-205ENST00000399494 IL15RAQ13261 267 aa20.9■□□□□ 0.94
HMGB1-205ENST00000399494 MS4A6AQ9H2W1 248 aa20.9■□□□□ 0.94
HMGB1-205ENST00000399494 U3KQE9 123 aa20.9■□□□□ 0.94
HMGB1-205ENST00000399494 DNAH10Q8IVF4 4471 aa20.9■□□□□ 0.94
HMGB1-205ENST00000399494 CFDP00746 253 aaPredicted RBP20.89■□□□□ 0.93
HMGB1-205ENST00000399494 CMC4P56277 68 aaPredicted RBP20.89■□□□□ 0.93
HMGB1-205ENST00000399494 CYCSP99999 105 aaKnown RBP20.89■□□□□ 0.93
HMGB1-205ENST00000399494 BPIFCQ8NFQ6 507 aa20.89■□□□□ 0.93
HMGB1-205ENST00000399494 STXBP6Q8NFX7 210 aa20.89■□□□□ 0.93
HMGB1-205ENST00000399494 NMES1Q9C002 83 aa20.89■□□□□ 0.93
HMGB1-205ENST00000399494 NPVFQ9HCQ7 196 aa20.89■□□□□ 0.93
HMGB1-205ENST00000399494 HELTA6NFD8 242 aa20.88■□□□□ 0.93
HMGB1-205ENST00000399494 FNDC10F2Z333 226 aa20.88■□□□□ 0.93
HMGB1-205ENST00000399494 C16orf54Q6UWD8 224 aa20.88■□□□□ 0.93
HMGB1-205ENST00000399494 GATAD1Q8WUU5 269 aa20.88■□□□□ 0.93
HMGB1-205ENST00000399494 PPP1R14BQ96C90 147 aa20.88■□□□□ 0.93
HMGB1-205ENST00000399494 RARRES2Q99969 163 aa20.88■□□□□ 0.93
HMGB1-205ENST00000399494 FAM24AA6NFZ4 105 aa20.87■□□□□ 0.93
HMGB1-205ENST00000399494 RLN2P04090 185 aa20.87■□□□□ 0.93
HMGB1-205ENST00000399494 C11orf1Q9H5F2 150 aa20.87■□□□□ 0.93
HMGB1-205ENST00000399494 LYRM2Q9NU23 88 aaPredicted RBP20.87■□□□□ 0.93
HMGB1-205ENST00000399494 AP2S1P53680 142 aaPredicted RBP20.86■□□□□ 0.93
HMGB1-205ENST00000399494 ARL16Q0P5N6 197 aa20.86■□□□□ 0.93
HMGB1-205ENST00000399494 LRRC37A5PQ49AS3 106 aa20.86■□□□□ 0.93
HMGB1-205ENST00000399494 GLMPQ8WWB7 406 aa20.86■□□□□ 0.93
HMGB1-205ENST00000399494 GGACTQ9BVM4 153 aa20.86■□□□□ 0.93
HMGB1-205ENST00000399494 TRAV2A0A0B4J234 112 aa20.85■□□□□ 0.93
HMGB1-205ENST00000399494 BUB3O43684 328 aa20.85■□□□□ 0.93
HMGB1-205ENST00000399494 CST7O76096 145 aa20.85■□□□□ 0.93
HMGB1-205ENST00000399494 SLC38A11Q08AI6 406 aa20.85■□□□□ 0.93
HMGB1-205ENST00000399494 CYP2G1PQ6ZSU1 146 aa20.85■□□□□ 0.93
HMGB1-205ENST00000399494 STX12Q86Y82 276 aa20.85■□□□□ 0.93
HMGB1-205ENST00000399494 GATA2P23769 480 aaPredicted RBP20.84■□□□□ 0.93
HMGB1-205ENST00000399494 NANOS2P60321 138 aaKnown RBP20.84■□□□□ 0.93
HMGB1-205ENST00000399494 TEPPQ6URK8 271 aa20.84■□□□□ 0.93
HMGB1-205ENST00000399494 SIGLEC15Q6ZMC9 328 aa20.84■□□□□ 0.93
HMGB1-205ENST00000399494 ALG5Q9Y673 324 aa20.84■□□□□ 0.93
HMGB1-205ENST00000399494 H2BFSP57053 126 aa20.83■□□□□ 0.93
HMGB1-205ENST00000399494 OR11H2Q8NH07 326 aa20.83■□□□□ 0.93
HMGB1-205ENST00000399494 C11orf45Q8TAV5 145 aa20.83■□□□□ 0.93
HMGB1-205ENST00000399494 HERC2O95714 4834 aa20.83■□□□□ 0.92
HMGB1-205ENST00000399494 ORM2P19652 201 aa20.82■□□□□ 0.92
HMGB1-205ENST00000399494 SULT1A1P50225 295 aa20.82■□□□□ 0.92
HMGB1-205ENST00000399494 SELENOTP62341 195 aa20.82■□□□□ 0.92
HMGB1-205ENST00000399494 TMEM252Q8N6L7 170 aa20.82■□□□□ 0.92
HMGB1-205ENST00000399494 OR1B1Q8NGR6 318 aa20.82■□□□□ 0.92
HMGB1-205ENST00000399494 C11orf68Q9H3H3 251 aaKnown RBP20.82■□□□□ 0.92
HMGB1-205ENST00000399494 IGSF23A1L1A6 192 aa20.81■□□□□ 0.92
HMGB1-205ENST00000399494 S100A7P31151 101 aa20.81■□□□□ 0.92
HMGB1-205ENST00000399494 HBG1P69891 147 aa20.81■□□□□ 0.92
HMGB1-205ENST00000399494 HBG2P69892 147 aa20.81■□□□□ 0.92
HMGB1-205ENST00000399494 TMEM182Q6ZP80 229 aaPredicted RBP20.81■□□□□ 0.92
HMGB1-205ENST00000399494 TMEM147Q9BVK8 224 aa20.81■□□□□ 0.92
HMGB1-205ENST00000399494 MFFQ9GZY8 342 aa20.81■□□□□ 0.92
HMGB1-205ENST00000399494 FBXL17Q9UF56 701 aa20.81■□□□□ 0.92
HMGB1-205ENST00000399494 E5RGE8 158 aa20.8■□□□□ 0.92
HMGB1-205ENST00000399494 K7EQG2 157 aa20.8■□□□□ 0.92
HMGB1-205ENST00000399494 SLC45A2Q9UMX9 530 aa20.8■□□□□ 0.92
HMGB1-205ENST00000399494 LINC00869P0C866 280 aa20.79■□□□□ 0.92
HMGB1-205ENST00000399494 S100A11P31949 105 aa20.79■□□□□ 0.92
HMGB1-205ENST00000399494 RGS21Q2M5E4 152 aa20.79■□□□□ 0.92
HMGB1-205ENST00000399494 C1orf194Q5T5A4 169 aa20.79■□□□□ 0.92
HMGB1-205ENST00000399494 PPP1R1CQ8WVI7 109 aa20.79■□□□□ 0.92
HMGB1-205ENST00000399494 UQCC1Q9NVA1 299 aa20.79■□□□□ 0.92
HMGB1-205ENST00000399494 OR5AC2Q9NZP5 309 aa20.79■□□□□ 0.92
HMGB1-205ENST00000399494 DOK5Q9P104 306 aa20.79■□□□□ 0.92
HMGB1-205ENST00000399494 PET100P0DJ07 73 aa20.78■□□□□ 0.92
HMGB1-205ENST00000399494 DEFB131AP59861 70 aa20.78■□□□□ 0.92
HMGB1-205ENST00000399494 ZNF546Q86UE3 836 aa20.78■□□□□ 0.92
HMGB1-205ENST00000399494 OR8I2Q8N0Y5 310 aa20.78■□□□□ 0.92
HMGB1-205ENST00000399494 FAM24BQ8N5W8 94 aa20.78■□□□□ 0.92
HMGB1-205ENST00000399494 DCANP1Q8TF63 244 aa20.78■□□□□ 0.92
HMGB1-205ENST00000399494 SLC25A31Q9H0C2 315 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms