RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 Q56UQ5 140 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 C5orf17Q8NAS9 161 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 FAM110DQ8TAY7 271 aaPredicted RBP11.76□□□□□ -0.53
CBX3-202ENST00000396386 HSPB9Q9BQS6 159 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 EPDR1Q9UM22 224 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 S4R3C0 116 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 FLNCQ14315 2725 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 IGHV1-69DA0A0B4J2H0 117 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 WI2-2373I1.2A0A1W2PRP0 233 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 PGPA6NDG6 321 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 ISLRO14498 428 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 OR2J3O76001 311 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 IGHV1-69P01742 117 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 IL4P05112 153 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 UBE2G1P62253 170 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 S100A7AQ86SG5 101 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 TMEM68Q96MH6 324 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 Q9H3A6 140 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 WNK2Q9Y3S1 2297 aa11.75□□□□□ -0.53
CBX3-202ENST00000396386 IGHV4-30-2A0A087WSY4 118 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 TRAV40A0A0B4J280 105 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 J3QKU1 62 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 NDUFB8O95169 186 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 HIST1H1EP10412 219 aaKnown RBP11.74□□□□□ -0.53
CBX3-202ENST00000396386 RPL15P61313 204 aaKnown RBP11.74□□□□□ -0.53
CBX3-202ENST00000396386 TMEM183BQ1AE95 376 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 ZNF491Q8N8L2 437 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 TMEM190Q8WZ59 177 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 LINC00479Q96M42 142 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 ATG101Q9BSB4 218 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 RNASE7Q9H1E1 156 aaKnown RBP11.74□□□□□ -0.53
CBX3-202ENST00000396386 PITPNC1Q9UKF7 332 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 F8W735 103 aaPredicted RBP11.74□□□□□ -0.53
CBX3-202ENST00000396386 ATP6V0E1O15342 81 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 ECSCRQ19T08 205 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 IBA57Q5T440 356 aaKnown RBP11.74□□□□□ -0.53
CBX3-202ENST00000396386 UNQ5815/PRO19632Q6UWF5 114 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 BAGE2Q86Y30 109 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 HIST3H2BBQ8N257 126 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 OTORQ9NRC9 128 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 FBXL7Q9UJT9 491 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 RPH3ALQ9UNE2 315 aa11.74□□□□□ -0.53
CBX3-202ENST00000396386 DOPEY1Q5JWR5 2465 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 IGHV3OR16-10A0A075B7F0 116 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 TRAV34A0A0B4J273 112 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 IFITM10A6NMD0 228 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 H3BTX0 84 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 S100A2P29034 98 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 BPIFA4PQ86YQ2 179 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 NHLRC2Q8NBF2 726 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 OR4F17Q8NGA8 305 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 SMIM12Q96EX1 92 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 ZNF586Q9NXT0 402 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 RNF24Q9Y225 148 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 TRAPPC1Q9Y5R8 145 aa11.73□□□□□ -0.53
CBX3-202ENST00000396386 FCGR2BP31994 310 aaPredicted RBP11.72□□□□□ -0.53
CBX3-202ENST00000396386 DSCR9P59020 149 aa11.72□□□□□ -0.53
CBX3-202ENST00000396386 C5orf56Q8N8D9 126 aa11.72□□□□□ -0.53
CBX3-202ENST00000396386 FMC1Q96HJ9 113 aa11.72□□□□□ -0.53
CBX3-202ENST00000396386 TXN2Q99757 166 aa11.72□□□□□ -0.53
CBX3-202ENST00000396386 TMUB1Q9BVT8 246 aa11.72□□□□□ -0.53
CBX3-202ENST00000396386 GAR1Q9NY12 217 aaKnown RBP11.72□□□□□ -0.53
CBX3-202ENST00000396386 MOB4Q9Y3A3 225 aa11.72□□□□□ -0.53
CBX3-202ENST00000396386 KLF12Q9Y4X4 402 aa11.72□□□□□ -0.53
CBX3-202ENST00000396386 RPL19P84098 196 aaKnown RBP11.72□□□□□ -0.53
CBX3-202ENST00000396386 USF2Q15853 346 aaPredicted RBP11.72□□□□□ -0.53
CBX3-202ENST00000396386 GFI1BQ5VTD9 330 aa11.72□□□□□ -0.53
CBX3-202ENST00000396386 FAM231DQ6ZW35 169 aa11.72□□□□□ -0.53
CBX3-202ENST00000396386 VN1R17PQ8TDU5 208 aa11.72□□□□□ -0.53
CBX3-202ENST00000396386 XKRY2A2RUG3 117 aa11.71□□□□□ -0.53
CBX3-202ENST00000396386 IGHV3-23P01764 117 aa11.71□□□□□ -0.53
CBX3-202ENST00000396386 TCRAP04437 139 aa11.71□□□□□ -0.53
CBX3-202ENST00000396386 MSMBP08118 114 aa11.71□□□□□ -0.53
CBX3-202ENST00000396386 COX6B1P14854 86 aa11.71□□□□□ -0.53
CBX3-202ENST00000396386 KLK9Q2XQG4 91 aa11.71□□□□□ -0.53
CBX3-202ENST00000396386 TMEM183AQ8IXX5 376 aa11.71□□□□□ -0.53
CBX3-202ENST00000396386 OR8I2Q8N0Y5 310 aa11.71□□□□□ -0.53
CBX3-202ENST00000396386 KLK9Q9UKQ9 250 aa11.71□□□□□ -0.53
CBX3-202ENST00000396386 TACC2O95359 2948 aa11.71□□□□□ -0.54
CBX3-202ENST00000396386 OR2T8A6NH00 312 aa11.7□□□□□ -0.54
CBX3-202ENST00000396386 ZNF705GA8MUZ8 300 aaPredicted RBP11.7□□□□□ -0.54
CBX3-202ENST00000396386 IGLC2P0DOY2 106 aa11.7□□□□□ -0.54
CBX3-202ENST00000396386 PAX1P15863 534 aa11.7□□□□□ -0.54
CBX3-202ENST00000396386 PDZD11Q5EBL8 140 aa11.7□□□□□ -0.54
CBX3-202ENST00000396386 COA6Q5JTJ3 125 aaKnown RBP11.7□□□□□ -0.54
CBX3-202ENST00000396386 BRD3OSQ6XYD6 125 aa11.7□□□□□ -0.54
CBX3-202ENST00000396386 GPR61Q9BZJ8 451 aa11.7□□□□□ -0.54
CBX3-202ENST00000396386 SERTAD4Q9NUC0 356 aa11.7□□□□□ -0.54
CBX3-202ENST00000396386 TRBV19A0A075B6N1 114 aa11.7□□□□□ -0.54
CBX3-202ENST00000396386 CMTM2Q8TAZ6 248 aa11.7□□□□□ -0.54
CBX3-202ENST00000396386 AKAP6Q13023 2319 aa11.69□□□□□ -0.54
CBX3-202ENST00000396386 TRBV9A0A0B4J1U6 114 aa11.69□□□□□ -0.54
CBX3-202ENST00000396386 GATCO43716 136 aaKnown RBP11.69□□□□□ -0.54
CBX3-202ENST00000396386 RHOGP84095 191 aa11.69□□□□□ -0.54
CBX3-202ENST00000396386 TMEM219Q86XT9 240 aa11.69□□□□□ -0.54
CBX3-202ENST00000396386 GPR82Q96P67 336 aa11.69□□□□□ -0.54
CBX3-202ENST00000396386 CHRDL1Q9BU40 450 aa11.69□□□□□ -0.54
CBX3-202ENST00000396386 MEGF9Q9H1U4 602 aa11.69□□□□□ -0.54
CBX3-202ENST00000396386 C7orf69Q9H7B7 122 aa11.69□□□□□ -0.54
CBX3-202ENST00000396386 LRRK2Q5S007 2527 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms