RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 TMEM249Q2WGJ8 235 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 KLF17Q5JT82 389 aaPredicted RBP13.06□□□□□ -0.32
PCDH1-203ENST00000394536 SP5Q6BEB4 398 aaPredicted RBP13.06□□□□□ -0.32
PCDH1-203ENST00000394536 LINC01560Q8TB33 94 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 DYSFO75923 2080 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 A0A1W2PPI3 338 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 CGB1A6NKQ9 187 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 RBPMS2Q6ZRY4 209 aaKnown RBP13.06□□□□□ -0.32
PCDH1-203ENST00000394536 STPG4Q8N801 248 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 SPOCK3Q9BQ16 436 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 TMUB1Q9BVT8 246 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 DKK4Q9UBT3 224 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 J3KRW8 73 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 PRSS1P07477 247 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 ZNF329Q86UD4 541 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 SLC25A2Q9BXI2 301 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 MBD3L4A6NDZ8 208 aaPredicted RBP13.05□□□□□ -0.32
PCDH1-203ENST00000394536 MBD3L3A6NE82 208 aaPredicted RBP13.05□□□□□ -0.32
PCDH1-203ENST00000394536 MBD3L5A6NJ08 208 aaPredicted RBP13.05□□□□□ -0.32
PCDH1-203ENST00000394536 LINC00614P0C842 121 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 IGLC2P0DOY2 106 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 IGLC3P0DOY3 106 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 PSG1P11464 419 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 NMUP48645 174 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 SCGB2A2Q13296 93 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 EIF4EBP1Q13541 118 aaPredicted RBP13.05□□□□□ -0.32
PCDH1-203ENST00000394536 MBD3L2Q8NHZ7 208 aaPredicted RBP13.05□□□□□ -0.32
PCDH1-203ENST00000394536 NDUFA4L2Q9NRX3 87 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 E7EUB6 86 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 CNTFRP26992 372 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 TSPOP30536 169 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 PPP1R27Q86WC6 154 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 FXYD7P58549 80 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 TMEM167AQ8TBQ9 72 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 DDB2Q92466 427 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 NDFIP1Q9BT67 221 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 RALYQ9UKM9 306 aaKnown RBP13.05□□□□□ -0.32
PCDH1-203ENST00000394536 ZFP30Q9Y2G7 519 aa13.05□□□□□ -0.32
PCDH1-203ENST00000394536 A0A1B0GUT8 65 aa13.04□□□□□ -0.32
PCDH1-203ENST00000394536 HLA-DRB1P01911 266 aa13.04□□□□□ -0.32
PCDH1-203ENST00000394536 RAB37Q96AX2 223 aa13.04□□□□□ -0.32
PCDH1-203ENST00000394536 ABHD17AQ96GS6 310 aa13.04□□□□□ -0.32
PCDH1-203ENST00000394536 SMIM15Q7Z3B0 74 aa13.04□□□□□ -0.32
PCDH1-203ENST00000394536 LIPFP07098 398 aa13.04□□□□□ -0.32
PCDH1-203ENST00000394536 CFHR2P36980 270 aa13.04□□□□□ -0.32
PCDH1-203ENST00000394536 TWIST1Q15672 202 aa13.04□□□□□ -0.32
PCDH1-203ENST00000394536 ADIPOQQ15848 244 aa13.04□□□□□ -0.32
PCDH1-203ENST00000394536 TMEM30BQ3MIR4 351 aa13.04□□□□□ -0.32
PCDH1-203ENST00000394536 MPV17L2Q567V2 206 aa13.04□□□□□ -0.32
PCDH1-203ENST00000394536 TMEM189A5PLL7 270 aa13.03□□□□□ -0.32
PCDH1-203ENST00000394536 Q8N7P7 452 aa13.03□□□□□ -0.32
PCDH1-203ENST00000394536 TP53TG3Q9ULZ0 132 aa13.03□□□□□ -0.32
PCDH1-203ENST00000394536 RNASE6Q93091 150 aaKnown RBP13.03□□□□□ -0.32
PCDH1-203ENST00000394536 OR2J3O76001 311 aa13.03□□□□□ -0.32
PCDH1-203ENST00000394536 TCRAP04437 139 aa13.03□□□□□ -0.32
PCDH1-203ENST00000394536 RELQ04864 619 aaPredicted RBP13.03□□□□□ -0.32
PCDH1-203ENST00000394536 C18orf15Q96N68 181 aa13.03□□□□□ -0.32
PCDH1-203ENST00000394536 TMEM133Q9H2Q1 129 aa13.03□□□□□ -0.32
PCDH1-203ENST00000394536 DOPEY2Q9Y3R5 2298 aa13.02□□□□□ -0.32
PCDH1-203ENST00000394536 M0R3E3 92 aa13.02□□□□□ -0.32
PCDH1-203ENST00000394536 CKS2P33552 79 aa13.02□□□□□ -0.32
PCDH1-203ENST00000394536 FAM215AQ9Y5M1 114 aa13.02□□□□□ -0.32
PCDH1-203ENST00000394536 TMEM178BH3BS89 294 aa13.02□□□□□ -0.33
PCDH1-203ENST00000394536 FAM57AQ8TBR7 257 aa13.02□□□□□ -0.33
PCDH1-203ENST00000394536 C12orf54Q6X4T0 127 aa13.02□□□□□ -0.33
PCDH1-203ENST00000394536 TMEM116Q8NCL8 245 aa13.02□□□□□ -0.33
PCDH1-203ENST00000394536 LY6HO94772 140 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 IGLL1P15814 213 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 ZNF503Q96F45 646 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 FMC1Q96HJ9 113 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 IGHV3-49A0A0A0MS15 119 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 ITGB1BP1O14713 200 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 TEX45Q8NA69 505 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 UFC1Q9Y3C8 167 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 F11RQ9Y624 299 aaKnown RBP13.01□□□□□ -0.33
PCDH1-203ENST00000394536 PTPRQQ9UMZ3 2332 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 IGKV3-7A0A075B6H7 116 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 A0A1B0GWJ7 208 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 SMIM27A0A1W2PRY6 76 aa13.01□□□□□ -0.33
PCDH1-203ENST00000394536 FBLL1A6NHQ2 334 aaKnown RBP13.01□□□□□ -0.33
PCDH1-203ENST00000394536 FNDC10F2Z333 226 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 IGHV1-8P0DP01 117 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 ECSCRQ19T08 205 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 OR10AG1Q8NH19 301 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 OR4A5Q8NH83 315 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 THYN1Q9P016 225 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 MRPL36Q9P0J6 103 aaKnown RBP13□□□□□ -0.33
PCDH1-203ENST00000394536 CLEC3BP05452 202 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 CEACAM3P40198 252 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 TM4SF20Q53R12 229 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 SEM1Q6ZVN7 128 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 OR5AN1Q8NGI8 311 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 ALKBH7Q9BT30 221 aaPredicted RBP13□□□□□ -0.33
PCDH1-203ENST00000394536 TNRC6AQ8NDV7 1962 aaKnown RBP13□□□□□ -0.33
PCDH1-203ENST00000394536 ARL6IP6Q8N6S5 226 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 IGFBPL1Q8WX77 278 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 CACNA1AO00555 2505 aa13□□□□□ -0.33
PCDH1-203ENST00000394536 IGLV3-9A0A075B6K5 115 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 IGHV3-66A0A0C4DH42 116 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 PRSS46E5RG02 174 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms