RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SH2D1AO60880 128 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 TCF15Q12870 199 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 SRSF8Q9BRL6 282 aaKnown RBP9.78□□□□□ -0.84
SYNPO-202ENST00000394243 SLC25A39Q9BZJ4 359 aaPredicted RBP9.78□□□□□ -0.84
SYNPO-202ENST00000394243 SCN5AQ14524 2016 aa9.78□□□□□ -0.84
SYNPO-202ENST00000394243 SPSB3Q6PJ21 355 aa9.77□□□□□ -0.84
SYNPO-202ENST00000394243 CD24P25063 80 aa9.77□□□□□ -0.84
SYNPO-202ENST00000394243 TMEM167AQ8TBQ9 72 aa9.77□□□□□ -0.84
SYNPO-202ENST00000394243 B9A039 149 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 IGKV1-5P01602 117 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 FAM90A1Q86YD7 464 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 IGKV1-12A0A0C4DH73 117 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 IGKV1D-12P01611 117 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 ZNF876PQ49A33 203 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 POLR2AP24928 1970 aaKnown RBP9.77□□□□□ -0.85
SYNPO-202ENST00000394243 DOPEY2Q9Y3R5 2298 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 INTS1Q8N201 2190 aaKnown RBP9.77□□□□□ -0.85
SYNPO-202ENST00000394243 SRD5A1P18405 259 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 NTF4P34130 210 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 PLXNB2O15031 1838 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 IGHV2OR16-5A0A0B4J2B6 119 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 PFN1P07737 140 aaKnown RBP9.77□□□□□ -0.85
SYNPO-202ENST00000394243 HTN3P15516 51 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 NRN1LQ496H8 165 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 CSTL1Q9H114 145 aa9.77□□□□□ -0.85
SYNPO-202ENST00000394243 PAPPA2Q9BXP8 1791 aa9.76□□□□□ -0.85
SYNPO-202ENST00000394243 TEX43Q6ZNM6 134 aa9.76□□□□□ -0.85
SYNPO-202ENST00000394243 C18orf32Q8TCD1 76 aa9.76□□□□□ -0.85
SYNPO-202ENST00000394243 DNAJC30Q96LL9 226 aa9.76□□□□□ -0.85
SYNPO-202ENST00000394243 OVOL2Q9BRP0 275 aa9.76□□□□□ -0.85
SYNPO-202ENST00000394243 A0A1W2PPM0 123 aa9.76□□□□□ -0.85
SYNPO-202ENST00000394243 CDKN1BP46527 198 aa9.76□□□□□ -0.85
SYNPO-202ENST00000394243 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.76□□□□□ -0.85
SYNPO-202ENST00000394243 TRBV20-1A0A075B6N2 111 aa9.76□□□□□ -0.85
SYNPO-202ENST00000394243 IGHV3-73A0A0B4J1V6 119 aa9.76□□□□□ -0.85
SYNPO-202ENST00000394243 LEPROTO15243 131 aa9.76□□□□□ -0.85
SYNPO-202ENST00000394243 SELLP14151 372 aa9.76□□□□□ -0.85
SYNPO-202ENST00000394243 RPL15P61313 204 aaKnown RBP9.76□□□□□ -0.85
SYNPO-202ENST00000394243 B5MCH6 92 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 PATJQ8NI35 1801 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 IGLL1P15814 213 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 APOBEC3AP31941 199 aaPredicted RBP9.75□□□□□ -0.85
SYNPO-202ENST00000394243 SRSF7Q16629 238 aaKnown RBP eCLIP9.75□□□□□ -0.85
SYNPO-202ENST00000394243 ATP1A1-AS1Q5TC04 95 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 SPXQ9BT56 116 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 PHF3Q92576 2039 aaKnown RBP9.75□□□□□ -0.85
SYNPO-202ENST00000394243 C5orf24Q7Z6I8 188 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 LINC00479Q96M42 142 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 IGHV1-2P23083 117 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 BVES-AS1Q5T3Y7 98 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 ZNF831Q5JPB2 1677 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 TRAV3A0A0B4J244 114 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 C10orf55Q5SWW7 151 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 Q8TAT8 98 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 CHCHD5Q9BSY4 110 aa9.75□□□□□ -0.85
SYNPO-202ENST00000394243 VCYO14598 125 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 ZNF688P0C7X2 276 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 PTPRDP23468 1912 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 SLX1AQ9BQ83 275 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 WNK3Q9BYP7 1800 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 YLPM1P49750 1951 aaKnown RBP9.74□□□□□ -0.85
SYNPO-202ENST00000394243 FAM27E3Q08E93 113 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 SIGLEC15Q6ZMC9 328 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 TIMM21Q9BVV7 248 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 TRGV11A0A075B6L2 103 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 H3BMG7 143 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 RASL10AQ92737 203 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 TRGV4A0A0C4DH28 118 aa9.74□□□□□ -0.85
SYNPO-202ENST00000394243 OVOL1O14753 267 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 C14orf178Q8N769 122 aaPredicted RBP9.73□□□□□ -0.85
SYNPO-202ENST00000394243 LINC01560Q8TB33 94 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 RPUSD1Q9UJJ7 312 aaKnown RBP9.73□□□□□ -0.85
SYNPO-202ENST00000394243 GREB1Q4ZG55 1949 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 IGHV2-26A0A0B4J1V2 119 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 GAGE12JA6NER3 117 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 GAGE7O76087 117 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 GAGE12FP0CL80 117 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 GAGE12GP0CL81 117 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 GAGE12IP0CL82 117 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 COX8AP10176 69 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 GAGE4Q13068 117 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 STHQ8IWL8 128 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 C5orf67F2Z3F1 127 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 ZNF329Q86UD4 541 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 IGKV1-27A0A075B6S5 117 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 MORN5Q5VZ52 161 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 ZIC4Q8N9L1 334 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 NYNRINQ9P2P1 1898 aaKnown RBP9.73□□□□□ -0.85
SYNPO-202ENST00000394243 MYMXA0A1B0GTQ4 84 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 DUSP14O95147 198 aaKnown RBP9.73□□□□□ -0.85
SYNPO-202ENST00000394243 CDPF1Q6NVV7 123 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 MESP1Q9BRJ9 268 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 TMEM133Q9H2Q1 129 aa9.73□□□□□ -0.85
SYNPO-202ENST00000394243 PF4P02776 101 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 FOXF2Q12947 444 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 PMVKQ15126 192 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 ARMS2P0C7Q2 107 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 ATP5J2P56134 94 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 C10orf91Q5T1B1 145 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 GAGE5Q13069 117 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms