RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 RNF2Q99496 336 aa11.33□□□□□ -0.6
SMPDL3A-201ENST00000368440 GINS3Q9BRX5 216 aa11.33□□□□□ -0.6
SMPDL3A-201ENST00000368440 RHPN1-AS1Q9BWJ2 59 aa11.33□□□□□ -0.6
SMPDL3A-201ENST00000368440 IGHV3-66A0A0C4DH42 116 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 ZFP92A6NM28 416 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 TEX46H3BTG2 121 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 TOMM40O96008 361 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 SLC25A32Q9H2D1 315 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 TGP01266 2768 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 UBE2L5PA0A1B0GUS4 154 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 CD7P09564 240 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 PSG1P11464 419 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 ZNF266Q14584 549 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 USF2Q15853 346 aaPredicted RBP11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 THAP8Q8NA92 274 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 OR10P1Q8NGE3 313 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 Q8WTZ3 238 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 PHYHIPLQ96FC7 376 aa11.32□□□□□ -0.6
SMPDL3A-201ENST00000368440 ATP6V1G1O75348 118 aa11.31□□□□□ -0.6
SMPDL3A-201ENST00000368440 IFNA5P01569 189 aa11.31□□□□□ -0.6
SMPDL3A-201ENST00000368440 IL4P05112 153 aa11.31□□□□□ -0.6
SMPDL3A-201ENST00000368440 CD81P60033 236 aa11.31□□□□□ -0.6
SMPDL3A-201ENST00000368440 VSIRQ9H7M9 311 aa11.31□□□□□ -0.6
SMPDL3A-201ENST00000368440 SMAD5-AS1Q9Y6J3 95 aa11.31□□□□□ -0.6
SMPDL3A-201ENST00000368440 SMCO3A2RU48 225 aa11.3□□□□□ -0.6
SMPDL3A-201ENST00000368440 DFFBO76075 338 aa11.3□□□□□ -0.6
SMPDL3A-201ENST00000368440 RD3LP0DJH9 198 aa11.3□□□□□ -0.6
SMPDL3A-201ENST00000368440 CRYBB3P26998 211 aa11.3□□□□□ -0.6
SMPDL3A-201ENST00000368440 AKR1C1Q04828 323 aa11.3□□□□□ -0.6
SMPDL3A-201ENST00000368440 RBPMS2Q6ZRY4 209 aaKnown RBP11.3□□□□□ -0.6
SMPDL3A-201ENST00000368440 WFDC10AQ9H1F0 79 aa11.3□□□□□ -0.6
SMPDL3A-201ENST00000368440 TRAV25A0A0B4J276 109 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 NMBP08949 121 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 NPPCP23582 126 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 ATP6V0CP27449 155 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 CLLU1Q5K131 121 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 GTSCR1Q86UQ5 136 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 OR51G1Q8NGK1 321 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 METTL26Q96S19 204 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 TRGV9Q99603 122 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 PLA2G2EQ9NZK7 142 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 COL7A1Q02388 2944 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 TSPAN4O14817 238 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 DLK1P80370 383 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 FAM90A2PQ658T7 463 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 EIF5AL1Q6IS14 154 aaKnown RBP11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 TMEM182Q6ZP80 229 aaPredicted RBP11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 SCGB1C1Q8TD33 95 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 RSG1Q9BU20 258 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 ARV1Q9H2C2 271 aa11.29□□□□□ -0.6
SMPDL3A-201ENST00000368440 IGKV3-7A0A075B6H7 116 aa11.28□□□□□ -0.6
SMPDL3A-201ENST00000368440 IGHV4-30-4P0DP06 118 aa11.28□□□□□ -0.6
SMPDL3A-201ENST00000368440 GATA2P23769 480 aaPredicted RBP11.28□□□□□ -0.6
SMPDL3A-201ENST00000368440 NDUFA5Q16718 116 aa11.28□□□□□ -0.6
SMPDL3A-201ENST00000368440 TCF24Q7RTU0 167 aa11.28□□□□□ -0.6
SMPDL3A-201ENST00000368440 OR2G3Q8NGZ4 309 aa11.28□□□□□ -0.6
SMPDL3A-201ENST00000368440 RNF125Q96EQ8 232 aa11.28□□□□□ -0.6
SMPDL3A-201ENST00000368440 UQCC1Q9NVA1 299 aa11.28□□□□□ -0.6
SMPDL3A-201ENST00000368440 U3KQE9 123 aa11.28□□□□□ -0.6
SMPDL3A-201ENST00000368440 ZNF705EA8MWA4 302 aaPredicted RBP11.27□□□□□ -0.6
SMPDL3A-201ENST00000368440 SPP1P10451 314 aa11.27□□□□□ -0.6
SMPDL3A-201ENST00000368440 TMEM144Q7Z5S9 345 aa11.27□□□□□ -0.6
SMPDL3A-201ENST00000368440 SPAG8Q99932 426 aaPredicted RBP11.27□□□□□ -0.6
SMPDL3A-201ENST00000368440 B9D2Q9BPU9 175 aa11.27□□□□□ -0.6
SMPDL3A-201ENST00000368440 PBDC1Q9BVG4 233 aa11.27□□□□□ -0.6
SMPDL3A-201ENST00000368440 TMEM147Q9BVK8 224 aa11.27□□□□□ -0.6
SMPDL3A-201ENST00000368440 C19orf73Q9NVV2 129 aa11.27□□□□□ -0.6
SMPDL3A-201ENST00000368440 FRMD6-AS1P0C7T7 363 aa11.27□□□□□ -0.61
SMPDL3A-201ENST00000368440 LYZP61626 148 aa11.27□□□□□ -0.61
SMPDL3A-201ENST00000368440 DEFB125Q8N687 156 aa11.27□□□□□ -0.61
SMPDL3A-201ENST00000368440 RNF141Q8WVD5 230 aa11.27□□□□□ -0.61
SMPDL3A-201ENST00000368440 CITED4Q96RK1 184 aa11.27□□□□□ -0.61
SMPDL3A-201ENST00000368440 FGF7P21781 194 aa11.26□□□□□ -0.61
SMPDL3A-201ENST00000368440 TFPI2P48307 235 aa11.26□□□□□ -0.61
SMPDL3A-201ENST00000368440 GBGT1Q8N5D6 347 aa11.26□□□□□ -0.61
SMPDL3A-201ENST00000368440 STPG3Q8N7X2 389 aa11.26□□□□□ -0.61
SMPDL3A-201ENST00000368440 RABAC1Q9UI14 185 aa11.26□□□□□ -0.61
SMPDL3A-201ENST00000368440 DNAH9Q9NYC9 4486 aa11.26□□□□□ -0.61
SMPDL3A-201ENST00000368440 FNDC10F2Z333 226 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 SEC11BP0C7V7 166 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 BMI1P35226 326 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 FHITP49789 147 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 ATP6V1FQ16864 119 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 COMMD7Q86VX2 200 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 ASCL2Q99929 193 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 WDR61Q9GZS3 305 aaKnown RBP11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 NPVFQ9HCQ7 196 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 A0A1W2PS18 150 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 OR11H12B2RN74 326 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 FABP1P07148 127 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 SULT1A2P50226 295 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 C16orf54Q6UWD8 224 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 CYP2G1PQ6ZSU1 146 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 GLMPQ8WWB7 406 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 GNPNAT1Q96EK6 184 aaPredicted RBP11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 TMEM231Q9H6L2 316 aa11.25□□□□□ -0.61
SMPDL3A-201ENST00000368440 A0A1B0GV50 99 aa11.24□□□□□ -0.61
SMPDL3A-201ENST00000368440 ODF3L2Q3SX64 289 aa11.24□□□□□ -0.61
SMPDL3A-201ENST00000368440 FAM213BQ8TBF2 198 aa11.24□□□□□ -0.61
SMPDL3A-201ENST00000368440 NARS2Q96I59 477 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms