RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 MPTX1A8MV57 137 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 TRBV7-1A0A0A6YYK4 115 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 VCYO14598 125 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 MMP23AO75900 390 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 UBE2BP63146 152 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 TAL2Q16559 108 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 TCTEX1D4Q5JR98 221 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 ZNF525Q8N782 197 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 MSRB2Q9Y3D2 182 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 TCRAP04437 139 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 PMVKQ15126 192 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 ATRAIDQ6UW56 229 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 TIMM21Q9BVV7 248 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 TM2D1Q9BX74 207 aa8.4□□□□□ -1.06
CLIP1-202ENST00000358808 TNFSF13O75888 250 aa8.4□□□□□ -1.07
CLIP1-202ENST00000358808 SRP19P09132 144 aaKnown RBP8.4□□□□□ -1.07
CLIP1-202ENST00000358808 KLF5Q13887 457 aaPredicted RBP8.4□□□□□ -1.07
CLIP1-202ENST00000358808 MDS2Q8NDY4 140 aa8.4□□□□□ -1.07
CLIP1-202ENST00000358808 C1QTNF9P0C862 333 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 RPL23P62829 140 aaKnown RBP8.39□□□□□ -1.07
CLIP1-202ENST00000358808 CHCHD1Q96BP2 118 aaKnown RBP8.39□□□□□ -1.07
CLIP1-202ENST00000358808 SMPXQ9UHP9 88 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 A0A087WWL8 130 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 IGHV1-46P01743 117 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 HSD52Q0P140 79 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 TPTE2P1Q5T6R2 138 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 LCN12Q6JVE5 192 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 CTHRC1Q96CG8 243 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 SPXQ9BT56 116 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 EP300Q09472 2414 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-202ENST00000358808 GAGE12JA6NER3 117 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 GAGE1Q13065 139 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 GAGE4Q13068 117 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 GAGE5Q13069 117 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 OR10W1Q8NGF6 305 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 SMIM2Q9BVW6 85 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 DEPPQ9NTK1 212 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 PMS2P5A8MQ11 134 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 SCN5AQ14524 2016 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 D6R8Y8 96 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 RAMP3O60896 148 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 TNFRSF14Q92956 283 aa8.39□□□□□ -1.07
CLIP1-202ENST00000358808 PQLC2LA1A4F0 135 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 SLC25A16P16260 332 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 ZNF138P52744 262 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 RNF223E7ERA6 249 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 CD59P13987 128 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 C9orf139Q6ZV77 190 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 GSN-AS1Q9NRJ2 163 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 SYNJ2BPP57105 145 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 C14orf178Q8N769 122 aaPredicted RBP8.38□□□□□ -1.07
CLIP1-202ENST00000358808 hADV29S1A0JD25 119 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 APOC4P55056 127 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 PRR31Q5SQ13 230 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 MINOS1Q5TGZ0 78 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 EXOC3-AS1Q8N2X6 119 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 MINOS1-NBL1R4GNA1 71 aa8.38□□□□□ -1.07
CLIP1-202ENST00000358808 SPTBN1Q01082 2364 aaKnown RBP8.38□□□□□ -1.07
CLIP1-202ENST00000358808 IGHG3P01860 377 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 PFN2P35080 140 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 SP5Q6BEB4 398 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-202ENST00000358808 LINC00477Q96M19 166 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 SCRT1Q9BWW7 348 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 SOCS3O14543 225 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 DEFB131AP59861 70 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 DMRTC2Q8IXT2 367 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-202ENST00000358808 TMEM256Q8N2U0 113 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 TSKUQ8WUA8 353 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 USMG5Q96IX5 58 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 OSTCQ9NRP0 149 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 DKK4Q9UBT3 224 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 FAM223BA6NKX1 122 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 INAFM2P0DMQ5 153 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 SUPT4H1P63272 117 aaKnown RBP8.37□□□□□ -1.07
CLIP1-202ENST00000358808 LINC01590Q5TEZ4 76 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 LYZL1Q6UWQ5 148 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 FAM223AQ8IWN6 122 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 BMPERQ8N8U9 685 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 SPRR3Q9UBC9 169 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 XCL2Q9UBD3 114 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 SPTBN2O15020 2390 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 IGHV1-3A0A0C4DH29 117 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 LOC105371267A0A1B0GV96 52 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 A0A1W2PRE2 83 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 CD55P08174 381 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 ZNF497Q6ZNH5 498 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 VWCEQ96DN2 955 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 TRBV25-1A0A075B6N4 114 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 IGKV1D-43A0A0B4J1Z2 117 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 CHKB-CPT1BH3BT56 60 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 C1QL4Q86Z23 238 aa8.37□□□□□ -1.07
CLIP1-202ENST00000358808 TEX48A0A1B0GUV7 120 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 SH2D1AO60880 128 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 LY6G5BQ8NDX9 201 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 IGHV3-16A0A0C4DH30 117 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 IGFL4Q6B9Z1 124 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 MRPL14Q6P1L8 145 aaKnown RBP8.36□□□□□ -1.07
CLIP1-202ENST00000358808 ZNF837Q96EG3 531 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-202ENST00000358808 RHPN1-AS1Q9BWJ2 59 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 MRPS18CQ9Y3D5 142 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms