RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 GRIFINA4D1Z8 144 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 TCF21O43680 179 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 CIDEAO60543 219 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 ZNF253O75346 499 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 ACTL6BO94805 426 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 AMY1AP04745 511 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 UBE2E1P51965 193 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 PRR20EP86478 221 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 PRR20CP86479 221 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 PRR20DP86480 221 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 PRR20BP86481 221 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 PRR20AP86496 221 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 VN1R17PQ8TDU5 208 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 KCNS1Q96KK3 526 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 NAT8BQ9UHF3 227 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 SIGLEC9Q9Y336 463 aa10.24□□□□□ -0.77
CLK3-201ENST00000345005 TBL2Q9Y4P3 447 aaKnown RBP10.24□□□□□ -0.77
CLK3-201ENST00000345005 A0A1W2PRD5 423 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 A0A1W2PRE2 83 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 A0A1W2PRF3 423 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 A0A1W2PRM7 423 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 DIRC3C9JPN6 131 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 SUB1P53999 127 aaKnown RBP eCLIP10.23□□□□□ -0.77
CLK3-201ENST00000345005 UBE2V1Q13404 147 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 PMCHL1Q16048 86 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 MRGPRG-AS1Q2M3A8 158 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 LHFPL4Q7Z7J7 247 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 PPP1R27Q86WC6 154 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 OR10W1Q8NGF6 305 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 CFHR4Q92496 578 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 PERPQ96FX8 193 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 MRPL27Q9P0M9 148 aaKnown RBP10.23□□□□□ -0.77
CLK3-201ENST00000345005 IGHV4-61A0A0C4DH41 118 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 PGPEP1LA6NFU8 196 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 CYSRT1A8MQ03 144 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 K7EN84 100 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 MOSP00540 346 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 RNASE2P10153 161 aaKnown RBP10.23□□□□□ -0.77
CLK3-201ENST00000345005 CNTFRP26992 372 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 PTTG1IPP53801 180 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 MRPL32Q9BYC8 188 aaKnown RBP10.23□□□□□ -0.77
CLK3-201ENST00000345005 TPSG1Q9NRR2 321 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 CDC42EP3Q9UKI2 254 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 PAM16Q9Y3D7 125 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 ABCA2Q9BZC7 2435 aa10.23□□□□□ -0.77
CLK3-201ENST00000345005 USP9YO00507 2555 aaPredicted RBP10.22□□□□□ -0.77
CLK3-201ENST00000345005 CGB1A6NKQ9 187 aa10.22□□□□□ -0.77
CLK3-201ENST00000345005 HSBP1L1C9JCN9 74 aa10.22□□□□□ -0.77
CLK3-201ENST00000345005 E7EUB6 86 aa10.22□□□□□ -0.77
CLK3-201ENST00000345005 DEFA4P12838 97 aa10.22□□□□□ -0.77
CLK3-201ENST00000345005 HNF1AP20823 631 aa10.22□□□□□ -0.77
CLK3-201ENST00000345005 RPL27AP46776 148 aaKnown RBP10.22□□□□□ -0.77
CLK3-201ENST00000345005 WIPF2Q8TF74 440 aaPredicted RBP10.22□□□□□ -0.77
CLK3-201ENST00000345005 BORCS7Q96B45 105 aa10.22□□□□□ -0.77
CLK3-201ENST00000345005 NAV3Q8IVL0 2385 aa10.22□□□□□ -0.77
CLK3-201ENST00000345005 SMIM27A0A1W2PRY6 76 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 SLC17A3O00476 420 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 AMTP48728 403 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 COMPP49747 757 aaPredicted RBP10.21□□□□□ -0.77
CLK3-201ENST00000345005 LINC00310P59036 64 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 PAX8Q06710 450 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 TNXAQ16473 311 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 CENPWQ5EE01 88 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 TMEM136Q6ZRR5 245 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 OR8I2Q8N0Y5 310 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 SSMEM1Q8WWF3 244 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 GNB4Q9HAV0 340 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 SEPSECSQ9HD40 501 aaKnown RBP10.21□□□□□ -0.77
CLK3-201ENST00000345005 NRN1Q9NPD7 142 aa10.21□□□□□ -0.77
CLK3-201ENST00000345005 ZNF331Q9NQX6 463 aaPredicted RBP10.21□□□□□ -0.77
CLK3-201ENST00000345005 DOPEY2Q9Y3R5 2298 aa10.21□□□□□ -0.78
CLK3-201ENST00000345005 ANKRD17O75179 2603 aaKnown RBP10.21□□□□□ -0.78
CLK3-201ENST00000345005 IGHV4-30-2A0A087WSY4 118 aa10.21□□□□□ -0.78
CLK3-201ENST00000345005 IZUMO1RA6ND01 250 aa10.21□□□□□ -0.78
CLK3-201ENST00000345005 ZNF324O75467 553 aaPredicted RBP10.21□□□□□ -0.78
CLK3-201ENST00000345005 KRTDAPP60985 99 aa10.21□□□□□ -0.78
CLK3-201ENST00000345005 WT1-ASQ06250 92 aa10.21□□□□□ -0.78
CLK3-201ENST00000345005 PLGLAQ15195 96 aa10.21□□□□□ -0.78
CLK3-201ENST00000345005 C10orf55Q5SWW7 151 aa10.21□□□□□ -0.78
CLK3-201ENST00000345005 PET117Q6UWS5 81 aa10.21□□□□□ -0.78
CLK3-201ENST00000345005 NPBQ8NG41 125 aa10.21□□□□□ -0.78
CLK3-201ENST00000345005 CACNG8Q8WXS5 425 aa10.21□□□□□ -0.78
CLK3-201ENST00000345005 FBXL15Q9H469 300 aa10.21□□□□□ -0.78
CLK3-201ENST00000345005 MRPS16Q9Y3D3 137 aaKnown RBP10.21□□□□□ -0.78
CLK3-201ENST00000345005 CRYBG3Q68DQ2 2970 aa10.2□□□□□ -0.78
CLK3-201ENST00000345005 A0A1B0GUS0 222 aa10.2□□□□□ -0.78
CLK3-201ENST00000345005 NBR2O15453 112 aa10.2□□□□□ -0.78
CLK3-201ENST00000345005 LINC00869P0C866 280 aa10.2□□□□□ -0.78
CLK3-201ENST00000345005 CTRLP40313 264 aa10.2□□□□□ -0.78
CLK3-201ENST00000345005 HES1Q14469 280 aa10.2□□□□□ -0.78
CLK3-201ENST00000345005 MMDQ15546 238 aa10.2□□□□□ -0.78
CLK3-201ENST00000345005 FAM231DQ6ZW35 169 aa10.2□□□□□ -0.78
CLK3-201ENST00000345005 ZNF738Q8NE65 137 aa10.2□□□□□ -0.78
CLK3-201ENST00000345005 NRGNQ92686 78 aa10.2□□□□□ -0.78
CLK3-201ENST00000345005 NDUFA3O95167 84 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 APCSP02743 223 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 SLC25A16P16260 332 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 CD69Q07108 199 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 EBI3Q14213 229 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 SPATA45Q537H7 98 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms