RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PMS2P11Q13670 270 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 CST9LP1Q5W188 147 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 FAM90A2PQ658T7 463 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 RBMS3Q6XE24 437 aaKnown RBP3.21□□□□□ -1.9
MCF2-201ENST00000338585 CCDC28AQ8IWP9 274 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 ZNF491Q8N8L2 437 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 OR1L4Q8NGR5 311 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 OR4F5Q8NH21 305 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 SVIPQ8NHG7 77 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 RNF125Q96EQ8 232 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 OR4F4Q96R69 305 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 C19orf24Q9BVV8 132 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 SEC11CQ9BY50 192 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 MRPL32Q9BYC8 188 aaKnown RBP3.21□□□□□ -1.9
MCF2-201ENST00000338585 ESM1Q9NQ30 184 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 MANBALQ9NQG1 85 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 MRPL27Q9P0M9 148 aaKnown RBP3.21□□□□□ -1.9
MCF2-201ENST00000338585 PUS1Q9Y606 427 aaKnown RBP eCLIP3.21□□□□□ -1.9
MCF2-201ENST00000338585 TRAV30A0A087WSZ9 112 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 ELOA3CA0A087WX78 387 aaPredicted RBP3.2□□□□□ -1.9
MCF2-201ENST00000338585 DNAJC9-AS1A6NH13 148 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 NUPL2O15504 423 aaKnown RBP3.2□□□□□ -1.9
MCF2-201ENST00000338585 TSPAN9O75954 239 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 LY6G6DO95868 133 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 IGLV1-40P01703 118 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 AKR1C3P42330 323 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 TAS2R45P59539 299 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 UBE2L3P68036 154 aaKnown RBP3.2□□□□□ -1.9
MCF2-201ENST00000338585 SOHLH1Q5JUK2 328 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 EEF1AKMT3Q96AZ1 226 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 FXYD5Q96DB9 178 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 OR5B12Q96R08 314 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 C20orf24Q9BUV8 137 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 KRTAP4-2Q9BYR5 136 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 SLC25A39Q9BZJ4 359 aaPredicted RBP3.2□□□□□ -1.9
MCF2-201ENST00000338585 NPFFR1Q9GZQ6 430 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 GNB4Q9HAV0 340 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 HIGD1AQ9Y241 93 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 ANK3Q12955 4377 aaKnown RBP3.2□□□□□ -1.9
MCF2-201ENST00000338585 FLNBO75369 2602 aaKnown RBP3.2□□□□□ -1.9
MCF2-201ENST00000338585 FAM223BA6NKX1 122 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 FAM74A7A6NL05 159 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 GGTLC3B5MD39 225 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 OR2C1O95371 312 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 FABP1P07148 127 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 GP9P14770 177 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 FCGR2BP31994 310 aaPredicted RBP3.2□□□□□ -1.9
MCF2-201ENST00000338585 ZNF674Q2M3X9 581 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 HIST2H2BDQ6DRA6 164 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 TOMM20LQ6UXN7 152 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 PQLC2Q6ZP29 291 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 FAM223AQ8IWN6 122 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 Q8WTZ3 238 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 RPUSD4Q96CM3 377 aaKnown RBP3.2□□□□□ -1.9
MCF2-201ENST00000338585 RNF2Q99496 336 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 TXN2Q99757 166 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 PAXXQ9BUH6 204 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 DERL1Q9BUN8 251 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 PRSS22Q9GZN4 317 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 OR51M1Q9H341 326 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 SMDT1Q9H4I9 107 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 HIVEP2P31629 2446 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 TRBV7-1A0A0A6YYK4 115 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 SCO2A0A1W2PP80 73 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 H3BQ15 152 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 H3BRN7 92 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 TGOLN2O43493 480 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 ZNF207O43670 478 aaKnown RBP3.2□□□□□ -1.9
MCF2-201ENST00000338585 IGHG4P01861 327 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 PRB4P10163 310 aaPredicted RBP3.2□□□□□ -1.9
MCF2-201ENST00000338585 RAB9AP51151 201 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 BTN1A1Q13410 526 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 FAM74A3Q4VXF1 159 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 TM4SF20Q53R12 229 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 SVBPQ8N300 66 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 TEX29Q8N6K0 151 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 CLRN3Q8NCR9 226 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 BLNKQ8WV28 456 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 SHANK2-AS3Q9BTD1 123 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 KRTAP17-1Q9BYP8 105 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 ZFAND3Q9H8U3 227 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 TMEM167BQ9NRX6 74 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 SERTAD4Q9NUC0 356 aa3.2□□□□□ -1.9
MCF2-201ENST00000338585 IGHV3OR16-13A0A075B7E8 117 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 IGHV3-49A0A0A0MS15 119 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 IGHV3-74A0A0B4J1X5 117 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 IGHV3-66A0A0C4DH42 116 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 CLPSL1A2RUU4 121 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 TMEM250H0YL14 139 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 H3BUA1 57 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 NDUFB4O95168 129 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 BRI3O95415 125 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 RPLP1P05386 114 aaKnown RBP3.19□□□□□ -1.9
MCF2-201ENST00000338585 HNF1AP20823 631 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 PSMB8P28062 276 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 ARL3P36405 182 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 RPL15P61313 204 aaKnown RBP3.19□□□□□ -1.9
MCF2-201ENST00000338585 AWAT1Q58HT5 328 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 ZNF343Q6P1L6 599 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 TMEM88Q6PEY1 159 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms