RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 MRPL16Q9NX20 251 aaKnown RBP13.22□□□□□ -0.29
NPHP3-201ENST00000337331 PRB3Q04118 309 aaPredicted RBP13.21□□□□□ -0.29
NPHP3-201ENST00000337331 TTC9CQ8N5M4 171 aa13.21□□□□□ -0.29
NPHP3-201ENST00000337331 LINC00479Q96M42 142 aa13.21□□□□□ -0.29
NPHP3-201ENST00000337331 TP53TG3Q9ULZ0 132 aa13.21□□□□□ -0.29
NPHP3-201ENST00000337331 PHLDA3Q9Y5J5 127 aa13.21□□□□□ -0.29
NPHP3-201ENST00000337331 LINC00312Q9Y6C7 94 aa13.21□□□□□ -0.29
NPHP3-201ENST00000337331 FOXI3A8MTJ6 420 aaPredicted RBP13.21□□□□□ -0.29
NPHP3-201ENST00000337331 CTRLP40313 264 aa13.21□□□□□ -0.29
NPHP3-201ENST00000337331 RHOGP84095 191 aa13.21□□□□□ -0.29
NPHP3-201ENST00000337331 A0A1W2PPM0 123 aa13.21□□□□□ -0.3
NPHP3-201ENST00000337331 B5MCH6 92 aa13.21□□□□□ -0.3
NPHP3-201ENST00000337331 OR9G9P0C7N8 305 aa13.21□□□□□ -0.3
NPHP3-201ENST00000337331 FAM90A1Q86YD7 464 aa13.21□□□□□ -0.3
NPHP3-201ENST00000337331 PTPRQQ9UMZ3 2332 aa13.21□□□□□ -0.3
NPHP3-201ENST00000337331 UPK2O00526 184 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 FOXF2Q12947 444 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 MBNL3Q9NUK0 354 aaKnown RBP13.2□□□□□ -0.3
NPHP3-201ENST00000337331 TMEM160Q9NX00 188 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 FOXA2Q9Y261 457 aaPredicted RBP13.2□□□□□ -0.3
NPHP3-201ENST00000337331 TRBV20OR9-2A0A075B6H5 130 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 C15orf61A6NNL5 157 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 RNFT1Q5M7Z0 435 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 OR9G4Q8NGQ1 327 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 SPRR3Q9UBC9 169 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 FAM208BQ5VWN6 2430 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 K7EN84 100 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 ANXA2RQ3ZCQ2 193 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 ZFHX2Q9C0A1 2572 aaPredicted RBP13.2□□□□□ -0.3
NPHP3-201ENST00000337331 PLXNA4Q9HCM2 1894 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 SS18L1O75177 396 aaPredicted RBP13.2□□□□□ -0.3
NPHP3-201ENST00000337331 ZFAND6Q6FIF0 208 aa13.2□□□□□ -0.3
NPHP3-201ENST00000337331 A0A1B0GUT8 65 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 H7C2G1 150 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 GNG5P63218 68 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 ABHD17AQ96GS6 310 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 NPFFR1Q9GZQ6 430 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 IGKV1-6A0A0C4DH72 117 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 DYNLRB2Q8TF09 96 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 GPR82Q96P67 336 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 ACACBO00763 2458 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 PSMB11A5LHX3 300 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 IGHV3-23P01764 117 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 LY6EQ16553 131 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 SH2D6Q7Z4S9 175 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 ARFGEF3Q5TH69 2177 aa13.19□□□□□ -0.3
NPHP3-201ENST00000337331 TMEM249Q2WGJ8 235 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 IGKV3-15P01624 115 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 LINC00173Q6ZV60 143 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 MGST2Q99735 147 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 RPP21Q9H633 154 aaKnown RBP13.18□□□□□ -0.3
NPHP3-201ENST00000337331 TNRC6AQ8NDV7 1962 aaKnown RBP13.18□□□□□ -0.3
NPHP3-201ENST00000337331 IGHV3OR16-10A0A075B7F0 116 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 ZNF585BQ52M93 769 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 TMEM42Q69YG0 159 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 SMIM20Q8N5G0 67 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 ARPC1AQ92747 370 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 IGKV1-39P01597 117 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 IGKV1D-39P04432 117 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 PYYP10082 97 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 COX8AP10176 69 aa13.18□□□□□ -0.3
NPHP3-201ENST00000337331 SCGB1A1P11684 91 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 AMTNQ6UX39 209 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 TEX45Q8NA69 505 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 TRAV5A0A0B4J249 113 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 NTF4P34130 210 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 TMPRSS3P57727 454 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 LINC00205P59089 165 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 SYT8Q8NBV8 401 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 LY96Q9Y6Y9 160 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 CENPVQ7Z7K6 275 aaPredicted RBP13.17□□□□□ -0.3
NPHP3-201ENST00000337331 FAM57AQ8TBR7 257 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 HS3ST6Q96QI5 342 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 C21orf62Q9NYP8 219 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 NOTCH4Q99466 2003 aa13.17□□□□□ -0.3
NPHP3-201ENST00000337331 PLXNB3Q9ULL4 1909 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 IGHV1-18A0A0C4DH31 117 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 H3BMG7 143 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.16□□□□□ -0.3
NPHP3-201ENST00000337331 CD69Q07108 199 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 C20orf204Q6ZNR8 217 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 LHFPL4Q7Z7J7 247 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 PCNX2A6NKB5 2137 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 H0YJW9 148 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 LCNL1Q6ZST4 164 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 NOTCH2Q04721 2471 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 PPIFP30405 207 aaKnown RBP13.16□□□□□ -0.3
NPHP3-201ENST00000337331 EMP1P54849 157 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 GAGE2BQ13066 116 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 GAGE2EQ4V326 116 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 KIR3DL3Q8N743 410 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 GAGE2DQ9UEU5 116 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 IGHV3-66A0A0C4DH42 116 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 SRRM5B3KS81 715 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 AREGP15514 252 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 Q0VFX4 171 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 NEUROG1Q92886 237 aa13.16□□□□□ -0.3
NPHP3-201ENST00000337331 MALRD1Q5VYJ5 2156 aa13.15□□□□□ -0.3
NPHP3-201ENST00000337331 IGHV1-24A0A0C4DH33 117 aa13.15□□□□□ -0.3
NPHP3-201ENST00000337331 SMAD7O15105 426 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms