RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MUC21A0A140T8X8 626 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 PRR32B1ATL7 298 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 DUTP33316 252 aaKnown RBP11.92□□□□□ -0.5
COL7A1-201ENST00000328333 MUC21Q5SSG8 566 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 C17orf98A8MV24 154 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 MPV17L2Q567V2 206 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 PEAR1Q5VY43 1037 aaPredicted RBP11.92□□□□□ -0.5
COL7A1-201ENST00000328333 Q0VG73 95 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 RBMY1FQ15415 496 aaKnown RBP11.92□□□□□ -0.5
COL7A1-201ENST00000328333 GAGE2AQ6NT46 116 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 D6R8Y8 96 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 H3BTX0 84 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 NDUFS6O75380 124 aaKnown RBP11.92□□□□□ -0.5
COL7A1-201ENST00000328333 GFI1BQ5VTD9 330 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 MRPS18CQ9Y3D5 142 aaKnown RBP11.92□□□□□ -0.5
COL7A1-201ENST00000328333 PF4P02776 101 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 PSG3Q16557 428 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 LAIR2Q6ISS4 152 aa11.92□□□□□ -0.5
COL7A1-201ENST00000328333 TIMM21Q9BVV7 248 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 C5orf67F2Z3F1 127 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 SMAD7O15105 426 aaKnown RBP11.91□□□□□ -0.5
COL7A1-201ENST00000328333 CSRP3P50461 194 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 C9orf118A6NHY6 69 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 PSG1P11464 419 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 SFTA2Q6UW10 78 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 EGR1P18146 543 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 PRTN3P24158 256 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 SPATA31B1PQ5VZV4 182 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 PRR7Q8TB68 274 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 GPHA2Q96T91 129 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 SOCS3O14543 225 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 RAMP3O60896 148 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 EFEMP2O95967 443 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 SPEM2Q0P670 501 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 CCL19Q99731 98 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 UBL5Q9BZL1 73 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 PYY3Q5JQD4 70 aa11.91□□□□□ -0.5
COL7A1-201ENST00000328333 TMEM52Q8NDY8 209 aa11.9□□□□□ -0.5
COL7A1-201ENST00000328333 IGHV1-24A0A0C4DH33 117 aa11.9□□□□□ -0.5
COL7A1-201ENST00000328333 SRSF2Q01130 221 aaKnown RBP11.9□□□□□ -0.5
COL7A1-201ENST00000328333 CD300EQ496F6 205 aaPredicted RBP11.9□□□□□ -0.5
COL7A1-201ENST00000328333 APOBEC3AP31941 199 aaPredicted RBP11.9□□□□□ -0.5
COL7A1-201ENST00000328333 SIGLEC15Q6ZMC9 328 aa11.9□□□□□ -0.5
COL7A1-201ENST00000328333 SPSB3Q6PJ21 355 aa11.9□□□□□ -0.5
COL7A1-201ENST00000328333 ZNF784Q8NCA9 323 aaPredicted RBP11.9□□□□□ -0.5
COL7A1-201ENST00000328333 OR11H6Q8NGC7 330 aa11.9□□□□□ -0.5
COL7A1-201ENST00000328333 NEU4Q8WWR8 484 aaPredicted RBP11.9□□□□□ -0.5
COL7A1-201ENST00000328333 A0A087X0K7 114 aa11.9□□□□□ -0.5
COL7A1-201ENST00000328333 PAX4O43316 350 aa11.9□□□□□ -0.5
COL7A1-201ENST00000328333 IGKV1D-33P01593 117 aa11.9□□□□□ -0.5
COL7A1-201ENST00000328333 IGKV1-33P01594 117 aa11.9□□□□□ -0.5
COL7A1-201ENST00000328333 PSG8Q9UQ74 426 aa11.9□□□□□ -0.5
COL7A1-201ENST00000328333 MYF5P13349 255 aa11.9□□□□□ -0.51
COL7A1-201ENST00000328333 FOXC1Q12948 553 aa11.9□□□□□ -0.51
COL7A1-201ENST00000328333 DPH3P1Q9H4G8 78 aa11.9□□□□□ -0.51
COL7A1-201ENST00000328333 ZIC3O60481 467 aa11.9□□□□□ -0.51
COL7A1-201ENST00000328333 MAFAQ8NHW3 353 aaPredicted RBP11.9□□□□□ -0.51
COL7A1-201ENST00000328333 NDUFC2O95298 119 aa11.89□□□□□ -0.51
COL7A1-201ENST00000328333 EIF4EBP2Q13542 120 aaPredicted RBP11.89□□□□□ -0.51
COL7A1-201ENST00000328333 CXCL1P09341 107 aa11.89□□□□□ -0.51
COL7A1-201ENST00000328333 FAM219BQ5XKK7 198 aa11.89□□□□□ -0.51
COL7A1-201ENST00000328333 GATD1Q8NB37 220 aa11.89□□□□□ -0.51
COL7A1-201ENST00000328333 VGLL1Q99990 258 aa11.89□□□□□ -0.51
COL7A1-201ENST00000328333 LINC00158P58513 81 aa11.89□□□□□ -0.51
COL7A1-201ENST00000328333 SRSF3P84103 164 aaKnown RBP11.89□□□□□ -0.51
COL7A1-201ENST00000328333 ADARB2-AS1A8MUL3 147 aa11.89□□□□□ -0.51
COL7A1-201ENST00000328333 NUP35Q8NFH5 326 aa11.89□□□□□ -0.51
COL7A1-201ENST00000328333 REG4Q9BYZ8 158 aa11.89□□□□□ -0.51
COL7A1-201ENST00000328333 ATG2AQ2TAZ0 1938 aa11.89□□□□□ -0.51
COL7A1-201ENST00000328333 NUP210LQ5VU65 1888 aa11.89□□□□□ -0.51
COL7A1-201ENST00000328333 CENPVQ7Z7K6 275 aaPredicted RBP11.89□□□□□ -0.51
COL7A1-201ENST00000328333 ZNF71Q9NQZ8 489 aaPredicted RBP11.89□□□□□ -0.51
COL7A1-201ENST00000328333 LYL1P12980 280 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 LINC00114Q6XXX2 140 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 TNS1Q9HBL0 1735 aaKnown RBP11.88□□□□□ -0.51
COL7A1-201ENST00000328333 OR13A1Q8NGR1 328 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 ATP5J2P56134 94 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 ZNRF1Q8ND25 227 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 TMEM141Q96I45 108 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 PRADC1Q9BSG0 188 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 SMIM10L1P0DMW3 83 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 COX6A1P12074 109 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 IGFBP6P24592 240 aaPredicted RBP11.88□□□□□ -0.51
COL7A1-201ENST00000328333 SMIM10Q96HG1 83 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 PROB1E7EW31 1015 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 J3QRE1 110 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 C9orf50Q5SZB4 431 aa11.88□□□□□ -0.51
COL7A1-201ENST00000328333 SRSF8Q9BRL6 282 aaKnown RBP11.88□□□□□ -0.51
COL7A1-201ENST00000328333 A0A1W2PQF6 199 aa11.87□□□□□ -0.51
COL7A1-201ENST00000328333 K7EP34 96 aa11.87□□□□□ -0.51
COL7A1-201ENST00000328333 ITLN2Q8WWU7 325 aaPredicted RBP11.87□□□□□ -0.51
COL7A1-201ENST00000328333 HAPLN4Q86UW8 402 aa11.87□□□□□ -0.51
COL7A1-201ENST00000328333 SSC4DQ8WTU2 575 aa11.87□□□□□ -0.51
COL7A1-201ENST00000328333 ACYP1P07311 99 aa11.87□□□□□ -0.51
COL7A1-201ENST00000328333 SRXN1Q9BYN0 137 aa11.87□□□□□ -0.51
COL7A1-201ENST00000328333 WDR83OSQ9Y284 106 aa11.87□□□□□ -0.51
COL7A1-201ENST00000328333 IGHV2-70P01814 119 aa11.87□□□□□ -0.51
COL7A1-201ENST00000328333 ERCC8Q13216 396 aa11.87□□□□□ -0.51
COL7A1-201ENST00000328333 TREML4Q6UXN2 200 aa11.87□□□□□ -0.51
COL7A1-201ENST00000328333 GREM1O60565 184 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms