RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 CCL1P22362 96 aa6.59□□□□□ -1.35
CIITA-201ENST00000324288 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.59□□□□□ -1.35
CIITA-201ENST00000324288 TDGF1P3P51864 188 aa6.59□□□□□ -1.35
CIITA-201ENST00000324288 REG4Q9BYZ8 158 aa6.59□□□□□ -1.35
CIITA-201ENST00000324288 PIEZO2Q9H5I5 2752 aa6.59□□□□□ -1.35
CIITA-201ENST00000324288 IGKV2-40A0A087WW87 121 aaPredicted RBP6.59□□□□□ -1.35
CIITA-201ENST00000324288 IGKV2D-40P01614 121 aaPredicted RBP6.59□□□□□ -1.35
CIITA-201ENST00000324288 MS4A6AQ9H2W1 248 aa6.59□□□□□ -1.35
CIITA-201ENST00000324288 PLXNA3P51805 1871 aa6.59□□□□□ -1.35
CIITA-201ENST00000324288 CHCHD5Q9BSY4 110 aa6.59□□□□□ -1.35
CIITA-201ENST00000324288 CCL3L1P16619 93 aa6.59□□□□□ -1.36
CIITA-201ENST00000324288 SS18L2Q9UHA2 77 aa6.59□□□□□ -1.36
CIITA-201ENST00000324288 LAGE3Q14657 143 aa6.59□□□□□ -1.36
CIITA-201ENST00000324288 SRSF8Q9BRL6 282 aaKnown RBP6.59□□□□□ -1.36
CIITA-201ENST00000324288 TNRC6BQ9UPQ9 1833 aaKnown RBP6.58□□□□□ -1.36
CIITA-201ENST00000324288 TRAV8-3A0A0A6YYJ7 113 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 GAGE12BA1L429 117 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 SP9P0CG40 484 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 MPV17L2Q567V2 206 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 TMEM167AQ8TBQ9 72 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 SAA2-SAA4A0A096LPE2 208 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 SAA2P0DJI9 122 aaPredicted RBP6.58□□□□□ -1.36
CIITA-201ENST00000324288 HGFACQ04756 655 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 NOTCH4Q99466 2003 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 NDUFA2O43678 99 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 GREM1O60565 184 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 C5orf24Q7Z6I8 188 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 STPG4Q8N801 248 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 ZNF319Q9P2F9 582 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 ITGB1BP1O14713 200 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 EFEMP2O95967 443 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 CST9LQ9H4G1 147 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 ZNF688P0C7X2 276 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 ZNF703Q9H7S9 590 aaPredicted RBP6.58□□□□□ -1.36
CIITA-201ENST00000324288 TMEM219Q86XT9 240 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 OR9G4Q8NGQ1 327 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 SAP25Q8TEE9 199 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 PLXNA2O75051 1894 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 NHSL1Q5SYE7 1610 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 IGHV3-53P01767 116 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 PLNP26678 52 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 EXOC3-AS1Q8N2X6 119 aa6.58□□□□□ -1.36
CIITA-201ENST00000324288 TRAV9-1A0A075B6T8 112 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 IFNL4K9M1U5 179 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 RPL15P61313 204 aaKnown RBP6.57□□□□□ -1.36
CIITA-201ENST00000324288 A0A1B0GTI1 187 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 C9JAW5 83 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 CIARTQ8N365 385 aaPredicted RBP6.57□□□□□ -1.36
CIITA-201ENST00000324288 ZNF837Q96EG3 531 aaPredicted RBP6.57□□□□□ -1.36
CIITA-201ENST00000324288 JPT2Q9H910 190 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 COL11A2P13942 1736 aaPredicted RBP6.57□□□□□ -1.36
CIITA-201ENST00000324288 NPIPB13A6NJU9 1138 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 NPIPB5A8MRT5 1133 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 PSMG4Q5JS54 123 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 PPP1R32Q7Z5V6 425 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 COL18A1P39060 1754 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 IFI27P40305 119 aaPredicted RBP6.57□□□□□ -1.36
CIITA-201ENST00000324288 DPM3Q9P2X0 92 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 APOBEC3AP31941 199 aaPredicted RBP6.57□□□□□ -1.36
CIITA-201ENST00000324288 SRSF1Q07955 248 aaKnown RBP eCLIP6.57□□□□□ -1.36
CIITA-201ENST00000324288 PAX1P15863 534 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 TCF15Q12870 199 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 IGHV2OR16-5A0A0B4J2B6 119 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 PRB2P02812 416 aaPredicted RBP6.57□□□□□ -1.36
CIITA-201ENST00000324288 PYY3Q5JQD4 70 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 TEX38Q6PEX7 206 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 F8VVB4 439 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 F8VWA3 439 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 K7ERJ3 54 aa6.57□□□□□ -1.36
CIITA-201ENST00000324288 TMEM54Q969K7 222 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 OR9G9P0C7N8 305 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 TSKUQ8WUA8 353 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 TCRAP04437 139 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 IGFL4Q6B9Z1 124 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 CHCHD1Q96BP2 118 aaKnown RBP6.56□□□□□ -1.36
CIITA-201ENST00000324288 MORN5Q5VZ52 161 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 IMMP1LQ96LU5 166 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 MGST2Q99735 147 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 TRAV12-1A0A0B4J245 112 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A10PA6NDY2 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A18PA6NE21 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A16PA6NEW6 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A20PA6NIJ5 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A8PA6NJQ4 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A7PA6NKC0 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A22PA8MWA6 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A12PA8MX19 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A5PA8MXJ8 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A23PA8MXZ1 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A15PP0C7V4 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A13PP0C7W8 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A14PP0C7W9 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 FAM90A24PP0C7X0 464 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 ALPK3Q96L96 1907 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 ABHD17AQ96GS6 310 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 BRWD3Q6RI45 1802 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 D6R8Y8 96 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 TGFBR3LH3BV60 316 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 C3orf79P0CE67 100 aa6.56□□□□□ -1.36
CIITA-201ENST00000324288 UCP1P25874 307 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms