RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 CHRDL1Q9BU40 450 aa11.26□□□□□ -0.61
VRK3-201ENST00000316763 FBXL15Q9H469 300 aa11.26□□□□□ -0.61
VRK3-201ENST00000316763 NOTCH2Q04721 2471 aa11.26□□□□□ -0.61
VRK3-201ENST00000316763 SMIM27A0A1W2PRY6 76 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 TEX22C9J3V5 150 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 DDTP30046 118 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 TPPP2P59282 170 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 PLP1P60201 277 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 RANP62826 216 aaKnown RBP11.25□□□□□ -0.61
VRK3-201ENST00000316763 PRB3Q04118 309 aaPredicted RBP11.25□□□□□ -0.61
VRK3-201ENST00000316763 FAM231DQ6ZW35 169 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 SRSF12Q8WXF0 261 aaKnown RBP11.25□□□□□ -0.61
VRK3-201ENST00000316763 NOL4LQ96MY1 436 aaPredicted RBP11.25□□□□□ -0.61
VRK3-201ENST00000316763 PRO1933Q9H354 126 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 GRIFINA4D1Z8 144 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 SLC25A5P05141 298 aaKnown RBP11.25□□□□□ -0.61
VRK3-201ENST00000316763 APELAP0DMC3 54 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 HTR1DP28221 377 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 CEACAM3P40198 252 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 UBE2G1P62253 170 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 TPTE2P1Q5T6R2 138 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 Q96MF0 132 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 MS4A10Q96PG2 267 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 SIRPDQ9H106 197 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 NAT8BQ9UHF3 227 aa11.25□□□□□ -0.61
VRK3-201ENST00000316763 ARHGAP32A7KAX9 2087 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 IZUMO1RA6ND01 250 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 CNIH1O95406 144 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 AMY1AP04745 511 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 NBEAP1P0C6P0 100 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 SLC25A16P16260 332 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 Q0VG73 95 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 BAGE3Q86Y29 109 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 WFDC11Q8NEX6 87 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 BLNKQ8WV28 456 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 SMIM12Q96EX1 92 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 DPM3Q9P2X0 92 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 EPDR1Q9UM22 224 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 HIGD1AQ9Y241 93 aa11.24□□□□□ -0.61
VRK3-201ENST00000316763 MED13LQ71F56 2210 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 IGHV3-21A0A0B4J1V1 117 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 SCGB1D1O95968 90 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 HLA-DQA1P01909 254 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 ESDP10768 282 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 MYCNOSP40205 109 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 TMEM183BQ1AE95 376 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 GRAMD2BQ96HH9 432 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 LINC00479Q96M42 142 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 A0A1B0GUS0 222 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 PGPA6NDG6 321 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 ODF3BA8MYP8 253 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 TIMM23O14925 209 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 TCL1AP56279 114 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 RAB4BP61018 213 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 TMEM136Q6ZRR5 245 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 REC114Q7Z4M0 266 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 LURAP1LQ8IV03 231 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 NHLRC2Q8NBF2 726 aa11.23□□□□□ -0.61
VRK3-201ENST00000316763 ZNF331Q9NQX6 463 aaPredicted RBP11.23□□□□□ -0.61
VRK3-201ENST00000316763 SETXQ7Z333 2677 aaKnown RBP11.23□□□□□ -0.61
VRK3-201ENST00000316763 A0A096LNT2 108 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 TRAV34A0A0B4J273 112 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 CYSRT1A8MQ03 144 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 RNF223E7ERA6 249 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 NUPR1O60356 82 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 SPINK4O60575 86 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 MMDQ15546 238 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 USF2Q15853 346 aaPredicted RBP11.22□□□□□ -0.61
VRK3-201ENST00000316763 RUSC1-AS1Q66K80 236 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 RASL11AQ6T310 242 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 C19orf35Q6ZS72 473 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 VMO1Q7Z5L0 202 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 WNT10AQ9GZT5 417 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 CR1P17927 2039 aa11.22□□□□□ -0.61
VRK3-201ENST00000316763 NBR2O15453 112 aa11.21□□□□□ -0.61
VRK3-201ENST00000316763 SERF1AO75920 110 aa11.21□□□□□ -0.61
VRK3-201ENST00000316763 HIST1H1EP10412 219 aaKnown RBP11.21□□□□□ -0.61
VRK3-201ENST00000316763 LDLRAD2Q5SZI1 272 aa11.21□□□□□ -0.61
VRK3-201ENST00000316763 ZNF664Q8N3J9 261 aa11.21□□□□□ -0.61
VRK3-201ENST00000316763 C5orf17Q8NAS9 161 aa11.21□□□□□ -0.61
VRK3-201ENST00000316763 RASL11BQ9BPW5 248 aa11.21□□□□□ -0.61
VRK3-201ENST00000316763 KLF12Q9Y4X4 402 aa11.21□□□□□ -0.61
VRK3-201ENST00000316763 MYO9AB2RTY4 2548 aa11.21□□□□□ -0.61
VRK3-201ENST00000316763 I3L2K1 104 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 IGLC1P0CG04 106 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 GP9P14770 177 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 HOXB4P17483 251 aaPredicted RBP11.21□□□□□ -0.62
VRK3-201ENST00000316763 LYZP61626 148 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 GNG5P63218 68 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 KLRD1Q13241 179 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 OR10J3Q5JRS4 329 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 MRPL54Q6P161 138 aaKnown RBP11.21□□□□□ -0.62
VRK3-201ENST00000316763 NUDT10Q8NFP7 164 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 TMEM190Q8WZ59 177 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 NUDT11Q96G61 164 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 FMC1Q96HJ9 113 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 ATG101Q9BSB4 218 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 NAGKQ9UJ70 344 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 TP53TG3Q9ULZ0 132 aa11.21□□□□□ -0.62
VRK3-201ENST00000316763 TOX4O94842 621 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms