RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 PPIAL4CA0A0B4J2A2 164 aa13.1□□□□□ -0.31
HOXD3-201ENST00000249440 TEX22C9J3V5 150 aa13.1□□□□□ -0.31
HOXD3-201ENST00000249440 TOMM40O96008 361 aa13.1□□□□□ -0.31
HOXD3-201ENST00000249440 PPIAL4GP0DN37 164 aa13.1□□□□□ -0.31
HOXD3-201ENST00000249440 Q8N976 141 aa13.1□□□□□ -0.31
HOXD3-201ENST00000249440 BORCS7Q96B45 105 aa13.1□□□□□ -0.31
HOXD3-201ENST00000249440 LYNX1G3V0Z9 82 aa13.09□□□□□ -0.31
HOXD3-201ENST00000249440 LYNX1P0DP58 116 aa13.09□□□□□ -0.31
HOXD3-201ENST00000249440 PRB3Q04118 309 aaPredicted RBP13.09□□□□□ -0.31
HOXD3-201ENST00000249440 RNF5Q99942 180 aa13.09□□□□□ -0.31
HOXD3-201ENST00000249440 Q9H3A6 140 aa13.09□□□□□ -0.31
HOXD3-201ENST00000249440 HIGD1AQ9Y241 93 aa13.09□□□□□ -0.31
HOXD3-201ENST00000249440 TCRAP04437 139 aa13.08□□□□□ -0.31
HOXD3-201ENST00000249440 GDF5OSQ5U4N7 250 aa13.08□□□□□ -0.31
HOXD3-201ENST00000249440 NIT1Q86X76 327 aa13.08□□□□□ -0.31
HOXD3-201ENST00000249440 MUC15Q8N387 334 aa13.08□□□□□ -0.31
HOXD3-201ENST00000249440 SRSF12Q8WXF0 261 aaKnown RBP13.08□□□□□ -0.31
HOXD3-201ENST00000249440 RBM14Q96PK6 669 aaKnown RBP13.08□□□□□ -0.31
HOXD3-201ENST00000249440 FBXL15Q9H469 300 aa13.08□□□□□ -0.31
HOXD3-201ENST00000249440 ABCA1O95477 2261 aa13.08□□□□□ -0.32
HOXD3-201ENST00000249440 OR2J3O76001 311 aa13.08□□□□□ -0.32
HOXD3-201ENST00000249440 LTAP01374 205 aa13.08□□□□□ -0.32
HOXD3-201ENST00000249440 PSG1P11464 419 aa13.08□□□□□ -0.32
HOXD3-201ENST00000249440 COX7A1P24310 79 aa13.08□□□□□ -0.32
HOXD3-201ENST00000249440 CAMPP49913 170 aa13.08□□□□□ -0.32
HOXD3-201ENST00000249440 LEMD1Q68G75 181 aa13.08□□□□□ -0.32
HOXD3-201ENST00000249440 FAM19A2Q8N3H0 131 aa13.08□□□□□ -0.32
HOXD3-201ENST00000249440 RPP21Q9H633 154 aaKnown RBP13.08□□□□□ -0.32
HOXD3-201ENST00000249440 COL12A1Q99715 3063 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 A8MWL6 223 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 IGLC1P0CG04 106 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 NTF3P20783 257 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 KLF5Q13887 457 aaPredicted RBP13.07□□□□□ -0.32
HOXD3-201ENST00000249440 PLGLAQ15195 96 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 CT83Q5H943 113 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 PRSS22Q9GZN4 317 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 GSX1Q9H4S2 264 aaPredicted RBP13.07□□□□□ -0.32
HOXD3-201ENST00000249440 ZFYVE26Q68DK2 2539 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 HSBP1O75506 76 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 C3orf79P0CE67 100 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 LYZP61626 148 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 RASL11BQ9BPW5 248 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 ALKBH7Q9BT30 221 aaPredicted RBP13.07□□□□□ -0.32
HOXD3-201ENST00000249440 ZNF492Q9P255 531 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 IGSF10Q6WRI0 2623 aa13.07□□□□□ -0.32
HOXD3-201ENST00000249440 COL6A6A6NMZ7 2263 aa13.06□□□□□ -0.32
HOXD3-201ENST00000249440 A0A1B0GXF2 115 aa13.06□□□□□ -0.32
HOXD3-201ENST00000249440 P01737 135 aa13.06□□□□□ -0.32
HOXD3-201ENST00000249440 SRSF8Q9BRL6 282 aaKnown RBP13.06□□□□□ -0.32
HOXD3-201ENST00000249440 SSBP4Q9BWG4 385 aaPredicted RBP13.06□□□□□ -0.32
HOXD3-201ENST00000249440 CFAP46Q8IYW2 2715 aa13.06□□□□□ -0.32
HOXD3-201ENST00000249440 VWC2LB2RUY7 222 aa13.06□□□□□ -0.32
HOXD3-201ENST00000249440 I3L2K1 104 aa13.06□□□□□ -0.32
HOXD3-201ENST00000249440 HBBP68871 147 aa13.06□□□□□ -0.32
HOXD3-201ENST00000249440 LINC01560Q8TB33 94 aa13.06□□□□□ -0.32
HOXD3-201ENST00000249440 DAZAP1Q96EP5 407 aaKnown RBP13.06□□□□□ -0.32
HOXD3-201ENST00000249440 SLC25A39Q9BZJ4 359 aaPredicted RBP13.06□□□□□ -0.32
HOXD3-201ENST00000249440 OTORQ9NRC9 128 aa13.06□□□□□ -0.32
HOXD3-201ENST00000249440 TMEM14CQ9P0S9 112 aa13.06□□□□□ -0.32
HOXD3-201ENST00000249440 SOX21Q9Y651 276 aaPredicted RBP13.06□□□□□ -0.32
HOXD3-201ENST00000249440 C19orf71A6NCJ1 209 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 H3BTX0 84 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 MMDQ15546 238 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 LINC00322Q6ZN03 302 aaPredicted RBP13.05□□□□□ -0.32
HOXD3-201ENST00000249440 TCF24Q7RTU0 167 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 OR2D3Q8NGH3 330 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 WNT10AQ9GZT5 417 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 LY6LH3BQJ8 138 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 CNIH1O95406 144 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 CTRLP40313 264 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 GPR6P46095 362 aaPredicted RBP13.05□□□□□ -0.32
HOXD3-201ENST00000249440 SPATA45Q537H7 98 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 OR8B3Q8NGG8 313 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 OR8B2Q96RD0 313 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 GFRA4Q9GZZ7 299 aa13.05□□□□□ -0.32
HOXD3-201ENST00000249440 EPG5Q9HCE0 2579 aa13.04□□□□□ -0.32
HOXD3-201ENST00000249440 LIPFP07098 398 aa13.04□□□□□ -0.32
HOXD3-201ENST00000249440 RPLP1P05386 114 aaKnown RBP13.04□□□□□ -0.32
HOXD3-201ENST00000249440 ZNF672Q499Z4 452 aaPredicted RBP13.04□□□□□ -0.32
HOXD3-201ENST00000249440 ONECUT1Q9UBC0 465 aa13.04□□□□□ -0.32
HOXD3-201ENST00000249440 FAM231BA6NCW3 169 aa13.03□□□□□ -0.32
HOXD3-201ENST00000249440 M0R2Z0 102 aa13.03□□□□□ -0.32
HOXD3-201ENST00000249440 GTSF1Q8WW33 167 aa13.03□□□□□ -0.32
HOXD3-201ENST00000249440 FAM162BQ5T6X4 162 aa13.02□□□□□ -0.32
HOXD3-201ENST00000249440 RBPMS2Q6ZRY4 209 aaKnown RBP13.02□□□□□ -0.32
HOXD3-201ENST00000249440 TMEM190Q8WZ59 177 aa13.02□□□□□ -0.32
HOXD3-201ENST00000249440 RNF24Q9Y225 148 aa13.02□□□□□ -0.32
HOXD3-201ENST00000249440 TIMM23O14925 209 aa13.02□□□□□ -0.33
HOXD3-201ENST00000249440 HTR1DP28221 377 aa13.02□□□□□ -0.33
HOXD3-201ENST00000249440 PMCHL1Q16048 86 aa13.02□□□□□ -0.33
HOXD3-201ENST00000249440 RNASEKQ6P5S7 137 aaKnown RBP13.02□□□□□ -0.33
HOXD3-201ENST00000249440 Q86TA4 180 aa13.02□□□□□ -0.33
HOXD3-201ENST00000249440 ANKHD1Q8IWZ3 2542 aaKnown RBP13.02□□□□□ -0.33
HOXD3-201ENST00000249440 FAM181BA6NEQ2 426 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 FAM90A27PA6NNH2 459 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 IGKV1-17P01599 117 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 COL8A1P27658 744 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 FBXL19-AS1Q494R0 122 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 KLHDC1Q8N7A1 406 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 LY6G5BQ8NDX9 201 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms