RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 APRG1Q8IVJ8 170 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 SMIM4Q8WVI0 70 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 IQGAP3Q86VI3 1631 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 IQGAP1P46940 1657 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 TRAV3A0A0B4J244 114 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 C2orf82Q6UX34 121 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 WFDC3Q8IUB2 231 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 TMEM255BQ8WV15 326 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 ADAMTSL3P82987 1691 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 TIAM1Q13009 1591 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 LOC389332A0A1B0GUA5 103 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 KBTBD11O94819 623 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 TRAV8-3A0A0A6YYJ7 113 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 LOC107986453A0A1B0GWG9 222 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 LINC01553A4QN01 128 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 TIAF1O95411 115 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 IGKCP01834 107 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 UBE2BP63146 152 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 SLC50A1Q9BRV3 221 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 TAAR2Q9P1P5 351 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 RIC1Q4ADV7 1423 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 ADAMTS20P59510 1910 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 MROH2BQ7Z745 1585 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 H2BFSP57053 126 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 HBBP68871 147 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 TMEM170BQ5T4T1 132 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 MRPL2Q5T653 305 aaKnown RBP2.93□□□□□ -1.94
SCN1A-221ENST00000641996 OVCA2Q8WZ82 227 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 ABHD14BQ96IU4 210 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 ROBO3Q96MS0 1386 aa2.93□□□□□ -1.94
SCN1A-221ENST00000641996 A0A0U1RQF3 1178 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 H0YJW9 148 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 IGFBP3P17936 291 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-221ENST00000641996 DCDP81605 110 aaKnown RBP2.92□□□□□ -1.94
SCN1A-221ENST00000641996 C22orf39Q6P5X5 142 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 ODF3L1Q8IXM7 274 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 OTOSQ8NHW6 89 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 VGLL1Q99990 258 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 RNF126Q9BV68 326 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 TRAV1-1A0A0B4J248 108 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 WNT9BO14905 357 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 CTGFP29279 349 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 PRSS3P2Q8NHM4 247 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 MYOZ3Q8TDC0 251 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 NPCDR1Q9BY65 106 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 COX7A2P2O60397 106 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 IGHG3P01860 377 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 ZAR1Q86SH2 424 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 CHCHD2Q9Y6H1 151 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-221ENST00000641996 KCNE3Q9Y6H6 103 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 PREX2Q70Z35 1606 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 SIP14410 1827 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 M0R3E3 92 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 RNASE1P07998 156 aaKnown RBP2.92□□□□□ -1.94
SCN1A-221ENST00000641996 C3orf79P0CE67 100 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 FSTP19883 344 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 TIMM10P62072 90 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 SLC25A2Q9BXI2 301 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 THAP10Q9P2Z0 257 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-221ENST00000641996 NOTCH1P46531 2555 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 CLASP1Q7Z460 1538 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 IGHV1OR21-1A0A087WYE8 117 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF815PA8K554 130 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 PRSS1P07477 247 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 PPICP45877 212 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 CDSNQ15517 529 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 CLEC19AQ6UXS0 136 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 SEM1Q6ZVN7 128 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 DENND4BO75064 1496 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-221ENST00000641996 SAMD9Q5K651 1589 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 INSL4Q14641 139 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 PRR30Q53SZ7 412 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-221ENST00000641996 COA6Q5JTJ3 125 aaKnown RBP2.92□□□□□ -1.94
SCN1A-221ENST00000641996 ZC2HC1BQ5TFG8 222 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 AJUBAQ96IF1 538 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 PLIN4Q96Q06 1357 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 C9JQL5 133 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 HOXD3P31249 432 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF137PP52743 207 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF141Q15928 474 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 TMEM179BQ7Z7N9 219 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 OVOL1O14753 267 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 CA6P23280 308 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 FOXA3P55318 350 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-221ENST00000641996 ICAM4Q14773 271 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 CAMSAP1Q5T5Y3 1602 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 PRSS27Q9BQR3 290 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 PTPRKQ15262 1439 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 MDS2Q8NDY4 140 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 GNB4Q9HAV0 340 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 FAM90A2PQ658T7 463 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 PROCRQ9UNN8 238 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF142P52746 1687 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-221ENST00000641996 MON2Q7Z3U7 1717 aa2.92□□□□□ -1.94
SCN1A-221ENST00000641996 C11orf94C9JXX5 98 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 LEPROTL1O95214 131 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 IGHG1P01857 330 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 PRB3Q04118 309 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-221ENST00000641996 SPRYD7Q5W111 196 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 SYS1-DBNDD2H3BUS1 97 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms