RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CRYBA2P53672 197 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 SLC25A34Q6PIV7 304 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 GATD1Q8NB37 220 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 DNAJC30Q96LL9 226 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 PARLQ9H300 379 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 DAZ1Q9NQZ3 744 aaKnown RBP5.1□□□□□ -1.59
SCN1A-217ENST00000637988 CRLF1O75462 422 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 TMEM95Q3KNT9 176 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 TMEM155Q4W5P6 130 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 RASL10AQ92737 203 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 KLHDC2Q9Y2U9 406 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 ROS1P08922 2347 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 MED12Q93074 2177 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 IGHV1-46P01743 117 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 AGAP20933 346 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 SRSF6Q13247 344 aaKnown RBP5.09□□□□□ -1.59
SCN1A-217ENST00000637988 UBE2V2Q15819 145 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 BIVMQ86UB2 503 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 CADM3Q8N126 398 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 SNHG12Q9BXW3 62 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 FREM1Q5H8C1 2179 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 A0A0G2JK05 382 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 CD160O95971 181 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 HSPB1P04792 205 aaKnown RBP5.09□□□□□ -1.59
SCN1A-217ENST00000637988 LGALS1P09382 135 aaKnown RBP5.09□□□□□ -1.59
SCN1A-217ENST00000637988 GATA2P23769 480 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-217ENST00000637988 DMRTA1Q5VZB9 504 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 TEX43Q6ZNM6 134 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 OR4D11Q8NGI4 311 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 REG4Q9BYZ8 158 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 NTN3O00634 580 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-217ENST00000637988 GGTLC1Q9BX51 225 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 PLXNA4Q9HCM2 1894 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 IGLV1-36A0A0B4J1U3 117 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 IGHV3-53P01767 116 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 PPBPP02775 128 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 ZNF506Q5JVG8 444 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 IGHV3-73A0A0B4J1V6 119 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 C12orf77C9JDV5 145 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 HBDP02042 147 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 SAA4P35542 130 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 FXYD7P58549 80 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 TMEM187Q14656 261 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 APCDD1LQ8NCL9 501 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 HSPB9Q9BQS6 159 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 NBASA2RRP1 2371 aa5.09□□□□□ -1.59
SCN1A-217ENST00000637988 SMIM10L1P0DMW3 83 aa5.09□□□□□ -1.6
SCN1A-217ENST00000637988 IGHV1-8P0DP01 117 aa5.09□□□□□ -1.6
SCN1A-217ENST00000637988 CCL18P55774 89 aa5.09□□□□□ -1.6
SCN1A-217ENST00000637988 MORN2Q502X0 79 aa5.09□□□□□ -1.6
SCN1A-217ENST00000637988 SMIM10Q96HG1 83 aa5.09□□□□□ -1.6
SCN1A-217ENST00000637988 MBD3L4A6NDZ8 208 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-217ENST00000637988 MBD3L3A6NE82 208 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-217ENST00000637988 MBD3L5A6NJ08 208 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-217ENST00000637988 RFLNBQ8N5W9 214 aa5.09□□□□□ -1.6
SCN1A-217ENST00000637988 MBD3L2Q8NHZ7 208 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-217ENST00000637988 WFDC12Q8WWY7 111 aa5.09□□□□□ -1.6
SCN1A-217ENST00000637988 PLXNB3Q9ULL4 1909 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 WNK1Q9H4A3 2382 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 TRBV25-1A0A075B6N4 114 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 VWC2LB2RUY7 222 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 M0R2P5 195 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 ANXA2RQ3ZCQ2 193 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 ELF5Q9UKW6 265 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-217ENST00000637988 A0A087X0M5 115 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 A0A1B0GX30 115 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 FAM90A9PA6NNJ1 464 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 PRB3Q04118 309 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-217ENST00000637988 MBD3L1Q8WWY6 194 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 SHANK1Q9Y566 2161 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 PQLC2LA1A4F0 135 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 SRRM4A7MD48 611 aaKnown RBP5.08□□□□□ -1.6
SCN1A-217ENST00000637988 NAT1P18440 290 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 IGLV3-21P80748 117 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-217ENST00000637988 MST1LQ2TV78 715 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 DMRTC2Q8IXT2 367 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-217ENST00000637988 C15orf53Q8NAA6 179 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 LINC00527Q9UJ94 153 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-217ENST00000637988 EFNA2O43921 213 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 FCN3O75636 299 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 CRYGSP22914 178 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 P2RY4P51582 365 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 FBLN7Q53RD9 439 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 TMEM200BQ69YZ2 307 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 RPUSD1Q9UJJ7 312 aaKnown RBP5.08□□□□□ -1.6
SCN1A-217ENST00000637988 IFITM2Q01629 132 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 ST6GAL2Q96JF0 529 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 PSMG3Q9BT73 122 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-217ENST00000637988 UQCR10Q9UDW1 63 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 RUNX1Q01196 453 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 C9orf139Q6ZV77 190 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 MED13Q9UHV7 2174 aa5.08□□□□□ -1.6
SCN1A-217ENST00000637988 IGHV1-3A0A0C4DH29 117 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 TMEM238C9JI98 176 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 SUPT4H1P63272 117 aaKnown RBP5.07□□□□□ -1.6
SCN1A-217ENST00000637988 FAM169BQ8N8A8 192 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 BUB1B-PAK6H3BSN5 160 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 IGHV4-39P01824 125 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 KLRD1Q13241 179 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms