RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 HYPMO75409 117 aa14.58□□□□□ -0.08
CLN3-263ENST00000637871 HOXB4P17483 251 aaPredicted RBP14.58□□□□□ -0.08
CLN3-263ENST00000637871 AKR1D1P51857 326 aa14.58□□□□□ -0.08
CLN3-263ENST00000637871 MFAP2P55001 183 aa14.58□□□□□ -0.08
CLN3-263ENST00000637871 FAM3BP58499 235 aaPredicted RBP14.58□□□□□ -0.08
CLN3-263ENST00000637871 LOXL1Q08397 574 aaPredicted RBP14.58□□□□□ -0.08
CLN3-263ENST00000637871 SFRP2Q96HF1 295 aa14.58□□□□□ -0.08
CLN3-263ENST00000637871 SLC25A2Q9BXI2 301 aa14.58□□□□□ -0.08
CLN3-263ENST00000637871 WNT10AQ9GZT5 417 aa14.58□□□□□ -0.08
CLN3-263ENST00000637871 OR51M1Q9H341 326 aa14.58□□□□□ -0.08
CLN3-263ENST00000637871 ZNF355PQ9NSJ1 428 aa14.58□□□□□ -0.08
CLN3-263ENST00000637871 ARHGAP32A7KAX9 2087 aa14.57□□□□□ -0.08
CLN3-263ENST00000637871 HELTA6NFD8 242 aa14.57□□□□□ -0.08
CLN3-263ENST00000637871 TOX4O94842 621 aa14.57□□□□□ -0.08
CLN3-263ENST00000637871 ZFP36P26651 326 aaKnown RBP14.57□□□□□ -0.08
CLN3-263ENST00000637871 TAS2R60P59551 318 aa14.57□□□□□ -0.08
CLN3-263ENST00000637871 UBE2L3P68036 154 aaKnown RBP14.57□□□□□ -0.08
CLN3-263ENST00000637871 FXYD3Q14802 87 aa14.57□□□□□ -0.08
CLN3-263ENST00000637871 OR5AU1Q8NGC0 362 aa14.57□□□□□ -0.08
CLN3-263ENST00000637871 SVEP1Q4LDE5 3571 aa14.57□□□□□ -0.08
CLN3-263ENST00000637871 TRAV30A0A087WSZ9 112 aa14.56□□□□□ -0.08
CLN3-263ENST00000637871 NPIPB5A8MRT5 1133 aa14.56□□□□□ -0.08
CLN3-263ENST00000637871 I3L2K1 104 aa14.56□□□□□ -0.08
CLN3-263ENST00000637871 FCN1O00602 326 aa14.56□□□□□ -0.08
CLN3-263ENST00000637871 FAM106CPP0CH98 169 aa14.56□□□□□ -0.08
CLN3-263ENST00000637871 BRS3P32247 399 aa14.56□□□□□ -0.08
CLN3-263ENST00000637871 SSBP2P81877 361 aaPredicted RBP14.56□□□□□ -0.08
CLN3-263ENST00000637871 ZNF90Q03938 601 aa14.56□□□□□ -0.08
CLN3-263ENST00000637871 KLRD1Q13241 179 aa14.56□□□□□ -0.08
CLN3-263ENST00000637871 PATE2Q6UY27 113 aa14.56□□□□□ -0.08
CLN3-263ENST00000637871 Q8N6K4 173 aa14.56□□□□□ -0.08
CLN3-263ENST00000637871 SMR3AQ99954 134 aa14.56□□□□□ -0.08
CLN3-263ENST00000637871 HOXA5P20719 270 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 RPL19P84098 196 aaKnown RBP14.55□□□□□ -0.08
CLN3-263ENST00000637871 FABP9Q0Z7S8 132 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 HES1Q14469 280 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 LHFPL4Q7Z7J7 247 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 OR10G8Q8NGN5 311 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 OCC1Q8TAD7 63 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 DERL1Q9BUN8 251 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 RNF24Q9Y225 148 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 IGHV4-31P0DP07 118 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 RPL35P42766 123 aaKnown RBP14.55□□□□□ -0.08
CLN3-263ENST00000637871 GNG4P50150 75 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 PRB3Q04118 309 aaPredicted RBP14.55□□□□□ -0.08
CLN3-263ENST00000637871 TIGITQ495A1 244 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 LINC00305Q7Z4B0 112 aa14.55□□□□□ -0.08
CLN3-263ENST00000637871 ZNF48Q96MX3 618 aaPredicted RBP14.55□□□□□ -0.08
CLN3-263ENST00000637871 MRPL36Q9P0J6 103 aaKnown RBP14.55□□□□□ -0.08
CLN3-263ENST00000637871 SCGB2A1O75556 95 aa14.54□□□□□ -0.08
CLN3-263ENST00000637871 TRGC2P03986 189 aa14.54□□□□□ -0.08
CLN3-263ENST00000637871 S100A9P06702 114 aaKnown RBP14.54□□□□□ -0.08
CLN3-263ENST00000637871 OR10J4P0C629 311 aa14.54□□□□□ -0.08
CLN3-263ENST00000637871 SUMO1P63165 101 aaKnown RBP14.54□□□□□ -0.08
CLN3-263ENST00000637871 TEX38Q6PEX7 206 aa14.54□□□□□ -0.08
CLN3-263ENST00000637871 THYN1Q9P016 225 aa14.54□□□□□ -0.08
CLN3-263ENST00000637871 TRBV20OR9-2A0A075B6H5 130 aa14.53□□□□□ -0.08
CLN3-263ENST00000637871 IGLC1P0CG04 106 aa14.53□□□□□ -0.08
CLN3-263ENST00000637871 CRYBB3P26998 211 aa14.53□□□□□ -0.08
CLN3-263ENST00000637871 TTC9CQ8N5M4 171 aa14.53□□□□□ -0.08
CLN3-263ENST00000637871 RASL11BQ9BPW5 248 aa14.53□□□□□ -0.08
CLN3-263ENST00000637871 TLN2Q9Y4G6 2542 aa14.53□□□□□ -0.08
CLN3-263ENST00000637871 CDX1P47902 265 aaPredicted RBP14.52□□□□□ -0.08
CLN3-263ENST00000637871 KRTAP1-1Q07627 177 aa14.52□□□□□ -0.08
CLN3-263ENST00000637871 ARPC1AQ92747 370 aa14.52□□□□□ -0.08
CLN3-263ENST00000637871 SMIM12Q96EX1 92 aa14.52□□□□□ -0.08
CLN3-263ENST00000637871 TMUB1Q9BVT8 246 aa14.52□□□□□ -0.08
CLN3-263ENST00000637871 CDC42EP3Q9UKI2 254 aa14.52□□□□□ -0.08
CLN3-263ENST00000637871 HIGD1AQ9Y241 93 aa14.52□□□□□ -0.08
CLN3-263ENST00000637871 CSPG4Q6UVK1 2322 aa14.52□□□□□ -0.08
CLN3-263ENST00000637871 ABCA1O95477 2261 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 GGTLC3B5MD39 225 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 HIST1H2BKO60814 126 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 HIST1H2BJP06899 126 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 TMEM11P17152 192 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 ORM2P19652 201 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 HIST1H2BOP23527 126 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 HIST1H2BBP33778 126 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 CNN1P51911 297 aaKnown RBP14.52□□□□□ -0.09
CLN3-263ENST00000637871 HIST1H2BDP58876 126 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 HIST1H2BCP62807 126 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 HIST2H2BEQ16778 126 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.52□□□□□ -0.09
CLN3-263ENST00000637871 OR5T1Q8NG75 326 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 OR1B1Q8NGR6 318 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 HIST1H2BHQ93079 126 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 FXYD5Q96DB9 178 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 HIST1H2BNQ99877 126 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 HIST1H2BMQ99879 126 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 OSTCQ9NRP0 149 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 TMEM14CQ9P0S9 112 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 F8P00451 2351 aa14.52□□□□□ -0.09
CLN3-263ENST00000637871 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.51□□□□□ -0.097e-9■■□□□ 13.5
CLN3-263ENST00000637871 SMIM6P0DI80 62 aa14.51□□□□□ -0.09
CLN3-263ENST00000637871 HIST1H1BP16401 226 aaKnown RBP14.51□□□□□ -0.09
CLN3-263ENST00000637871 S100A7P31151 101 aa14.51□□□□□ -0.09
CLN3-263ENST00000637871 CX3CL1P78423 397 aa14.51□□□□□ -0.09
CLN3-263ENST00000637871 TMEM68Q96MH6 324 aa14.51□□□□□ -0.09
CLN3-263ENST00000637871 TBX15Q96SF7 602 aa14.51□□□□□ -0.09
CLN3-263ENST00000637871 DMRT1Q9Y5R6 373 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms