RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 UTP11Q9Y3A2 253 aaKnown RBP-1.83□□□□□ -2.7
SCN1A-215ENST00000637285 RIMS2Q9UQ26 1411 aa-1.83□□□□□ -2.7
SCN1A-215ENST00000637285 KIAA1109Q2LD37 5005 aa-1.83□□□□□ -2.7
SCN1A-215ENST00000637285 BUB1B-PAK6H3BSN5 160 aa-1.84□□□□□ -2.7
SCN1A-215ENST00000637285 HBA1P69905 142 aa-1.84□□□□□ -2.7
SCN1A-215ENST00000637285 ATP6V1C2Q8NEY4 427 aa-1.84□□□□□ -2.7
SCN1A-215ENST00000637285 OR13C4Q8NGS5 318 aa-1.84□□□□□ -2.7
SCN1A-215ENST00000637285 OR10AG1Q8NH19 301 aa-1.84□□□□□ -2.7
SCN1A-215ENST00000637285 CNBD2Q96M20 576 aa-1.84□□□□□ -2.7
SCN1A-215ENST00000637285 LIMD2Q9BT23 127 aa-1.84□□□□□ -2.7
SCN1A-215ENST00000637285 ASCL3Q9NQ33 180 aa-1.84□□□□□ -2.7
SCN1A-215ENST00000637285 DKKL1Q9UK85 242 aa-1.84□□□□□ -2.7
SCN1A-215ENST00000637285 FLGP20930 4061 aaPredicted RBP-1.84□□□□□ -2.7
SCN1A-215ENST00000637285 HIVEP1P15822 2718 aa-1.84□□□□□ -2.7
SCN1A-215ENST00000637285 SPAG17Q6Q759 2223 aa-1.85□□□□□ -2.7
SCN1A-215ENST00000637285 MXRA5Q9NR99 2828 aa-1.85□□□□□ -2.7
SCN1A-215ENST00000637285 CNOT1A5YKK6 2376 aaKnown RBP-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 TTC41PQ6P2S7 1318 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 UBR4Q5T4S7 5183 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 E7EUB6 86 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 PIRO00625 290 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 CD79AP11912 226 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 KCNJ3P48549 501 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 RBM48Q5RL73 367 aaKnown RBP-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 FAM45BPQ6NSW5 357 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 OR52R1Q8NGF1 315 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 OR2T10Q8NGZ9 312 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 PRR15LQ9BU68 103 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 DERL2Q9GZP9 239 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 PBOV1Q9GZY1 135 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 MS4A6AQ9H2W1 248 aa-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 MRM2Q9UI43 246 aaKnown RBP-1.85□□□□□ -2.71
SCN1A-215ENST00000637285 KIF13BQ9NQT8 1826 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 GOLGA6L7A0A1B0GV03 622 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 ATP6V1G2O95670 118 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 CST4P01036 141 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 OR4E1P0C645 316 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 SLC35E2BP0CK96 405 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 DSCR4P56555 118 aaPredicted RBP-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 CDC42P60953 191 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 C18orf21Q32NC0 220 aaPredicted RBP-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 XAF1Q6GPH4 301 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 Q6ZS49 121 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 MRPL30Q8TCC3 161 aaKnown RBP-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 MALSU1Q96EH3 234 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 LINC00208Q96KT6 92 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 GGACTQ9BVM4 153 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 MED13LQ71F56 2210 aa-1.86□□□□□ -2.71
SCN1A-215ENST00000637285 SETD2Q9BYW2 2564 aaPredicted RBP-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 A0A1W2PRS3 328 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 SULT1C4O75897 302 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 PTNP21246 168 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 ANP32AP39687 249 aaKnown RBP-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 TSNQ15631 228 aaKnown RBP-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 COQ5Q5HYK3 327 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 C8orf74Q6P047 294 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 TRAPPC6BQ86SZ2 158 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 SLC51BQ86UW2 128 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 OR5AS1Q8N127 324 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 SERPINB11Q96P15 392 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 CCDC94Q9BW85 323 aaPredicted RBP-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 TANC1Q9C0D5 1861 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 TP53TG1Q9Y2A0 90 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 BZW2Q9Y6E2 419 aaKnown RBP-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 MYH10P35580 1976 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 MYH7BA7E2Y1 1941 aa-1.87□□□□□ -2.71
SCN1A-215ENST00000637285 SOGA1O94964 1423 aa-1.88□□□□□ -2.71
SCN1A-215ENST00000637285 KIF27Q86VH2 1401 aa-1.88□□□□□ -2.71
SCN1A-215ENST00000637285 EVI2AP22794 236 aa-1.88□□□□□ -2.71
SCN1A-215ENST00000637285 AP2S1P53680 142 aaPredicted RBP-1.88□□□□□ -2.71
SCN1A-215ENST00000637285 LPCAT3Q6P1A2 487 aa-1.88□□□□□ -2.71
SCN1A-215ENST00000637285 SLAMF6Q96DU3 332 aa-1.88□□□□□ -2.71
SCN1A-215ENST00000637285 Q96NJ1 140 aa-1.88□□□□□ -2.71
SCN1A-215ENST00000637285 SLC25A21Q9BQT8 299 aaPredicted RBP-1.88□□□□□ -2.71
SCN1A-215ENST00000637285 FAT2Q9NYQ8 4349 aa-1.88□□□□□ -2.71
SCN1A-215ENST00000637285 CSPG4Q6UVK1 2322 aa-1.88□□□□□ -2.71
SCN1A-215ENST00000637285 RFX7Q2KHR2 1363 aa-1.88□□□□□ -2.71
SCN1A-215ENST00000637285 ARHGEF11O15085 1522 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 FADS2O95864 444 aaKnown RBP-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 OTCP00480 354 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 IFNA10P01566 189 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 IL3P08700 152 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 PDE6GP18545 87 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 PPIBP23284 216 aaKnown RBP-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 S100A4P26447 101 aaKnown RBP-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 DYNLT1P63172 113 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 WFDC2Q14508 124 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 LINC00299Q6ZSB3 139 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 KLK6Q92876 244 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 DIRAS2Q96HU8 199 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 PACRGQ96M98 296 aaPredicted RBP-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 HIST1H2BLQ99880 126 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 OR51I2Q9H344 312 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 SVEP1Q4LDE5 3571 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 F5P12259 2224 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 ECM29Q5VYK3 1845 aa-1.89□□□□□ -2.71
SCN1A-215ENST00000637285 NHSL1Q5SYE7 1610 aa-1.9□□□□□ -2.71
SCN1A-215ENST00000637285 B4DSR2 109 aa-1.9□□□□□ -2.71
SCN1A-215ENST00000637285 M0R233 179 aa-1.9□□□□□ -2.71
SCN1A-215ENST00000637285 CLDN12P56749 244 aa-1.9□□□□□ -2.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms