RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 MPTX1A8MV57 137 aa8.59□□□□□ -1.03
CLN3-257ENST00000637110 FAM90A26D6RGX4 464 aa8.59□□□□□ -1.03
CLN3-257ENST00000637110 PITX3O75364 302 aa8.59□□□□□ -1.03
CLN3-257ENST00000637110 TOMM40O96008 361 aa8.59□□□□□ -1.03
CLN3-257ENST00000637110 IL7P13232 177 aa8.59□□□□□ -1.03
CLN3-257ENST00000637110 GPX4P36969 197 aaPredicted RBP8.59□□□□□ -1.03
CLN3-257ENST00000637110 KIR2DL5AQ8N109 375 aa8.59□□□□□ -1.03
CLN3-257ENST00000637110 KIR2DL5BQ8NHK3 375 aa8.59□□□□□ -1.03
CLN3-257ENST00000637110 C7orf50Q9BRJ6 194 aaKnown RBP8.59□□□□□ -1.03
CLN3-257ENST00000637110 CSTL1Q9H114 145 aa8.59□□□□□ -1.03
CLN3-257ENST00000637110 TRAV2A0A0B4J234 112 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 SYNGR2O43760 224 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 ADAP1O75689 374 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 FABP1P07148 127 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 OR4E1P0C645 316 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 PSG1P11464 419 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 ANXA7P20073 488 aaKnown RBP8.58□□□□□ -1.04
CLN3-257ENST00000637110 DHRS2Q13268 280 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 GAMTQ14353 236 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 USF2Q15853 346 aaPredicted RBP8.58□□□□□ -1.04
CLN3-257ENST00000637110 SPANXN5Q5MJ07 72 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 LYG2Q86SG7 212 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 OR51G1Q8NGK1 321 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 PPP1R14BQ96C90 147 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 SDHCQ99643 169 aaPredicted RBP8.58□□□□□ -1.04
CLN3-257ENST00000637110 PFDN2Q9UHV9 154 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 TP53TG1Q9Y2A0 90 aa8.58□□□□□ -1.04
CLN3-257ENST00000637110 A0A0J9YWU9 116 aa8.57□□□□□ -1.04
CLN3-257ENST00000637110 SCGB1D2O95969 90 aa8.57□□□□□ -1.04
CLN3-257ENST00000637110 ZNF688P0C7X2 276 aa8.57□□□□□ -1.04
CLN3-257ENST00000637110 AP2S1P53680 142 aaPredicted RBP8.57□□□□□ -1.04
CLN3-257ENST00000637110 LYZP61626 148 aa8.57□□□□□ -1.04
CLN3-257ENST00000637110 OR2F1Q13607 317 aa8.57□□□□□ -1.04
CLN3-257ENST00000637110 C16orf54Q6UWD8 224 aa8.57□□□□□ -1.04
CLN3-257ENST00000637110 STHQ8IWL8 128 aa8.57□□□□□ -1.04
CLN3-257ENST00000637110 FAM24BQ8N5W8 94 aa8.57□□□□□ -1.04
CLN3-257ENST00000637110 RNF183Q96D59 192 aa8.57□□□□□ -1.04
CLN3-257ENST00000637110 STRAPQ9Y3F4 350 aaKnown RBP8.57□□□□□ -1.04
CLN3-257ENST00000637110 HECTD4Q9Y4D8 3996 aa8.56□□□□□ -1.04
CLN3-257ENST00000637110 SNRPGP15A8MWD9 76 aa8.56□□□□□ -1.04
CLN3-257ENST00000637110 H3BP45 60 aa8.56□□□□□ -1.04
CLN3-257ENST00000637110 K7EQG2 157 aa8.56□□□□□ -1.04
CLN3-257ENST00000637110 CA1P00915 261 aaPredicted RBP8.56□□□□□ -1.04
CLN3-257ENST00000637110 ZNF90Q03938 601 aa8.56□□□□□ -1.04
CLN3-257ENST00000637110 CNPY1Q3B7I2 92 aa8.56□□□□□ -1.04
CLN3-257ENST00000637110 RNF125Q96EQ8 232 aa8.56□□□□□ -1.04
CLN3-257ENST00000637110 PSENENQ9NZ42 101 aa8.56□□□□□ -1.04
CLN3-257ENST00000637110 KIAA1109Q2LD37 5005 aa8.56□□□□□ -1.04
CLN3-257ENST00000637110 SMCO3A2RU48 225 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 CXorf65A6NEN9 183 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 KNCNA6PVL3 124 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 LYRM1O43325 122 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 SSSCA1O60232 199 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 NUP62P37198 522 aaPredicted RBP8.55□□□□□ -1.04
CLN3-257ENST00000637110 NKX2-1P43699 371 aaPredicted RBP8.55□□□□□ -1.04
CLN3-257ENST00000637110 POLR2GP62487 172 aaKnown RBP eCLIP8.55□□□□□ -1.04
CLN3-257ENST00000637110 AKR1C1Q04828 323 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 PMS2P11Q13670 270 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 PSMG4Q5JS54 123 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 ACTL10Q5JWF8 245 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 SIGLEC15Q6ZMC9 328 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 TMEM217Q8N7C4 229 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 GLMPQ8WWB7 406 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 RARRES2Q99969 163 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 GSKIPQ9P0R6 139 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 U3KQE9 123 aa8.55□□□□□ -1.04
CLN3-257ENST00000637110 TRAV6A0A075B6T7 132 aa8.54□□□□□ -1.04
CLN3-257ENST00000637110 BUB3O43684 328 aa8.54□□□□□ -1.04
CLN3-257ENST00000637110 BTCP35070 178 aa8.54□□□□□ -1.04
CLN3-257ENST00000637110 SNRPD3P62318 126 aaKnown RBP8.54□□□□□ -1.04
CLN3-257ENST00000637110 IAH1Q2TAA2 248 aaPredicted RBP8.54□□□□□ -1.04
CLN3-257ENST00000637110 OR8G2PQ6IF36 304 aa8.54□□□□□ -1.04
CLN3-257ENST00000637110 TRGV9Q99603 122 aa8.54□□□□□ -1.04
CLN3-257ENST00000637110 C20orf85Q9H1P6 137 aa8.54□□□□□ -1.04
CLN3-257ENST00000637110 IGKV1D-37A0A075B6S9 117 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 FAM25EA8MYX2 175 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 PLA2G10O15496 165 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 TCRBP04435 133 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 ID3Q02535 119 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 ZNF846Q147U1 533 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 OR8I2Q8N0Y5 310 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 OR11H2Q8NH07 326 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 DCANP1Q8TF63 244 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 LINC00052Q96N35 136 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 NRN1Q9NPD7 142 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 FBXL17Q9UF56 701 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 KMT2AQ03164 3969 aa8.53□□□□□ -1.04
CLN3-257ENST00000637110 CFDP00746 253 aaPredicted RBP8.52□□□□□ -1.05
CLN3-257ENST00000637110 ORM2P19652 201 aa8.52□□□□□ -1.05
CLN3-257ENST00000637110 MORN3Q6PF18 240 aaPredicted RBP8.52□□□□□ -1.05
CLN3-257ENST00000637110 ACOT7LQ6ZUV0 252 aa8.52□□□□□ -1.05
CLN3-257ENST00000637110 THAP8Q8NA92 274 aa8.52□□□□□ -1.05
CLN3-257ENST00000637110 ZBTB8BQ8NAP8 495 aaPredicted RBP8.52□□□□□ -1.05
CLN3-257ENST00000637110 BPIFCQ8NFQ6 507 aa8.52□□□□□ -1.05
CLN3-257ENST00000637110 OR4D5Q8NGN0 318 aa8.52□□□□□ -1.05
CLN3-257ENST00000637110 MITD1Q8WV92 249 aa8.52□□□□□ -1.05
CLN3-257ENST00000637110 S100ZQ8WXG8 99 aa8.52□□□□□ -1.05
CLN3-257ENST00000637110 RAB40CQ96S21 281 aa8.52□□□□□ -1.05
CLN3-257ENST00000637110 CCDC32Q9BV29 185 aa8.52□□□□□ -1.05
CLN3-257ENST00000637110 FAM240BA0A1B0GVZ2 78 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms