RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PTPN13Q12923 2485 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 OR5I1Q13606 314 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 SLC25A48Q6ZT89 311 aaKnown RBP3.24□□□□□ -1.89
SCN1A-214ENST00000637038 Q6ZWC4 215 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF439Q8NDP4 499 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 Q8TCH9 128 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 SLC25A33Q9BSK2 321 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 LPAR2Q9HBW0 351 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 TANC2Q9HCD6 1990 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 RTTNQ86VV8 2226 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 HELZ2Q9BYK8 2649 aaKnown RBP3.24□□□□□ -1.89
SCN1A-214ENST00000637038 TRAV3A0A0B4J244 114 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 TEX50A0A1B0GTY4 177 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 SPINK4O60575 86 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 SAP30O75446 220 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 IGHV3-7P01780 117 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 OR5AL1P0C617 328 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 FXYD3Q14802 87 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 RNFT1Q5M7Z0 435 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 TPTE2P1Q5T6R2 138 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 TMEM136Q6ZRR5 245 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 H1FXQ92522 213 aaKnown RBP3.24□□□□□ -1.89
SCN1A-214ENST00000637038 CCL13Q99616 98 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 HSPB8Q9UJY1 196 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 TCRBV4S1A1TA0A5B7 111 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 MBD3L4A6NDZ8 208 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-214ENST00000637038 MBD3L3A6NE82 208 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-214ENST00000637038 MBD3L5A6NJ08 208 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-214ENST00000637038 INS-IGF2F8WCM5 200 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 HYPMO75409 117 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 SAA1P0DJI8 122 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-214ENST00000637038 RNASE2P10153 161 aaKnown RBP3.24□□□□□ -1.89
SCN1A-214ENST00000637038 HBBP68871 147 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 GUSBP1Q15486 140 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 PRR27Q6MZM9 219 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 SMIM15Q7Z3B0 74 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 C5orf17Q8NAS9 161 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 MBD3L2Q8NHZ7 208 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-214ENST00000637038 IL17DQ8TAD2 202 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 TMEM167AQ8TBQ9 72 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 TSKUQ8WUA8 353 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 FMC1Q96HJ9 113 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 DYNLRB1Q9NP97 96 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 TRBV20OR9-2A0A075B6H5 130 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 A0A1B0GW15 77 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 K7EN84 100 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 K7EP13 123 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 RIGQ13278 110 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 PLGLAQ15195 96 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 TMEM177Q53S58 311 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 CT83Q5H943 113 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 C11orf42Q8N5U0 333 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF738Q8NE65 137 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 CHCHD1Q96BP2 118 aaKnown RBP3.24□□□□□ -1.89
SCN1A-214ENST00000637038 RNASE7Q9H1E1 156 aaKnown RBP3.24□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF355PQ9NSJ1 428 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 SMPXQ9UHP9 88 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 ZFP30Q9Y2G7 519 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 TRAV9-2A0A087WT02 112 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 ENSAO43768 121 aaKnown RBP3.23□□□□□ -1.89
SCN1A-214ENST00000637038 FOXH1O75593 365 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 TOX4O94842 621 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 C17orf58Q2M2W7 97 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF788Q6ZQV5 615 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 FDCSPQ8NFU4 85 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 OR9G1Q8NH87 305 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 LEAP2Q969E1 77 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 GPR82Q96P67 336 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 PMCHL2Q9BQD1 86 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 KRTAP17-1Q9BYP8 105 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 RPP21Q9H633 154 aaKnown RBP3.23□□□□□ -1.89
SCN1A-214ENST00000637038 TNFRSF19Q9NS68 423 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 LAMTOR2Q9Y2Q5 125 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 MRPS16Q9Y3D3 137 aaKnown RBP3.23□□□□□ -1.89
SCN1A-214ENST00000637038 USP9XQ93008 2570 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-214ENST00000637038 DYSFO75923 2080 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 IGLV3-9A0A075B6K5 115 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 PPIAL4EA0A075B759 164 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 PPIAL4DF5H284 164 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 SIAH2O43255 324 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 LHBP01229 141 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 TFF1P04155 84 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 CT45A10P0DMU9 189 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 PPIAL4FP0DN26 164 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 RPL27AP46776 148 aaKnown RBP3.23□□□□□ -1.89
SCN1A-214ENST00000637038 ATP1A1-AS1Q5TC04 95 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 IGFL2Q6UWQ7 119 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF833PQ6ZTB9 187 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 C8orf31Q8N9H6 132 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 NUP37Q8NFH4 326 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 OR4F17Q8NGA8 305 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 OR1B1Q8NGR6 318 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 AP1S3Q96PC3 154 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 GAFA1Q96PS6 74 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 TMEM70Q9BUB7 260 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 MAP1LC3CQ9BXW4 147 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 MRPL20Q9BYC9 149 aaKnown RBP3.23□□□□□ -1.89
SCN1A-214ENST00000637038 LINC00574Q9H8X3 128 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF492Q9P255 531 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 HIGD1AQ9Y241 93 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms