RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 CD14P08571 375 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 SPRR2BP35325 72 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 SPATA45Q537H7 98 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 Q8N402 240 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 TMEM254Q8TBM7 123 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 H1FXQ92522 213 aaKnown RBP-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 SMIM19Q96E16 107 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 SLC39A9Q9NUM3 307 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 DNAH2Q9P225 4427 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 PRRC2CQ9Y520 2896 aaKnown RBP-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 DCCP43146 1447 aa-1.16□□□□□ -2.6
SCN1A-211ENST00000635893 DOPEY2Q9Y3R5 2298 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 HPGDSO60760 199 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 BATFQ16520 125 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 LYSMD1Q96S90 227 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 PROK2Q9HC23 129 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 C14orf132Q9NPU4 83 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 OSTCQ9NRP0 149 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 AGPAT3Q9NRZ7 376 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 NHP2Q9NX24 153 aaKnown RBP-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 UBAP1Q9NZ09 502 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 C15orf41Q9Y2V0 281 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 CHD9Q3L8U1 2897 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 CADP27708 2225 aa-1.17□□□□□ -2.6
SCN1A-211ENST00000635893 CNOT1A5YKK6 2376 aaKnown RBP-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 WDR87Q6ZQQ6 2873 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 F8W1H4 67 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 LY6G6CO95867 125 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 PPYP01298 95 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 PET100P0DJ07 73 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 FXYD4P59646 89 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 CDC42P60953 191 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 SDHAF4Q5VUM1 108 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 CST9Q5W186 159 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 Q8IYB0 196 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 OR2T35Q8NGX2 323 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 C11orf68Q9H3H3 251 aaKnown RBP-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 SPTBP11277 2137 aa-1.18□□□□□ -2.6
SCN1A-211ENST00000635893 KIF13BQ9NQT8 1826 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 CHD8Q9HCK8 2581 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 LOC100506127A0A0U1RQW1 187 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 F5H768 121 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 SBF1O95248 1867 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 IVLP07476 585 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 MARCKSL1P49006 195 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 PMS2P3Q13401 168 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 Q3ZCU0 254 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 Q6ZQY7 126 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 ZNF833PQ6ZTB9 187 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 OR52L1Q8NGH7 329 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 KCTD7Q96MP8 289 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 CCL19Q99731 98 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 SIKE1Q9BRV8 207 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 MAP1LC3AQ9H492 121 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 UTP11Q9Y3A2 253 aaKnown RBP-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 JMJD1CQ15652 2540 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 CSMD3Q7Z407 3707 aa-1.19□□□□□ -2.6
SCN1A-211ENST00000635893 ANKHD1Q8IWZ3 2542 aaKnown RBP-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 JMJD7-PLA2G4BH0Y9G9 81 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 GADD45GO95257 159 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 TYMSP04818 313 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 C1orf195Q5TG92 126 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 TEN1Q86WV5 123 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 LRRC25Q8N386 305 aaPredicted RBP-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 TP53RKQ96S44 253 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 BCL2L10Q9HD36 194 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 CMTM6Q9NX76 183 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 FBXL12Q9NXK8 326 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 RNF11Q9Y3C5 154 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 SIP14410 1827 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 ATRQ13535 2644 aa-1.2□□□□□ -2.6
SCN1A-211ENST00000635893 FREM3P0C091 2139 aa-1.21□□□□□ -2.6
SCN1A-211ENST00000635893 ZGRF1Q86YA3 2104 aa-1.21□□□□□ -2.6
SCN1A-211ENST00000635893 TNS3Q68CZ2 1445 aa-1.21□□□□□ -2.6
SCN1A-211ENST00000635893 PRM1P04553 51 aa-1.21□□□□□ -2.6
SCN1A-211ENST00000635893 OR4E1P0C645 316 aa-1.21□□□□□ -2.6
SCN1A-211ENST00000635893 RPL12P30050 165 aaKnown RBP-1.21□□□□□ -2.6
SCN1A-211ENST00000635893 RNASE4P34096 147 aaKnown RBP-1.21□□□□□ -2.6
SCN1A-211ENST00000635893 MAGEA2P43356 314 aa-1.21□□□□□ -2.6
SCN1A-211ENST00000635893 GPER1Q99527 375 aa-1.21□□□□□ -2.6
SCN1A-211ENST00000635893 SPANXB1Q9NS25 103 aaPredicted RBP-1.21□□□□□ -2.6
SCN1A-211ENST00000635893 SPTBN4Q9H254 2564 aa-1.21□□□□□ -2.6
SCN1A-211ENST00000635893 FAT3Q8TDW7 4589 aa-1.22□□□□□ -2.6
SCN1A-211ENST00000635893 PLXNA4Q9HCM2 1894 aa-1.22□□□□□ -2.6
SCN1A-211ENST00000635893 DPRXA6NFQ7 191 aa-1.22□□□□□ -2.6
SCN1A-211ENST00000635893 IFITM1P13164 125 aa-1.22□□□□□ -2.6
SCN1A-211ENST00000635893 C2orf82Q6UX34 121 aa-1.22□□□□□ -2.6
SCN1A-211ENST00000635893 ANGPTL5Q86XS5 388 aa-1.22□□□□□ -2.6
SCN1A-211ENST00000635893 FUNDC1Q8IVP5 155 aa-1.22□□□□□ -2.6
SCN1A-211ENST00000635893 Q8TAT8 98 aa-1.22□□□□□ -2.6
SCN1A-211ENST00000635893 DNAJB3Q8WWF6 145 aa-1.22□□□□□ -2.6
SCN1A-211ENST00000635893 TOMM6Q96B49 74 aa-1.22□□□□□ -2.6
SCN1A-211ENST00000635893 AKAP13Q12802 2813 aa-1.22□□□□□ -2.61
SCN1A-211ENST00000635893 COL12A1Q99715 3063 aa-1.22□□□□□ -2.61
SCN1A-211ENST00000635893 PI4KAP42356 2102 aa-1.22□□□□□ -2.61
SCN1A-211ENST00000635893 TACC2O95359 2948 aa-1.22□□□□□ -2.61
SCN1A-211ENST00000635893 AKAP6Q13023 2319 aa-1.23□□□□□ -2.61
SCN1A-211ENST00000635893 TRAV10A0A0B4J240 114 aa-1.23□□□□□ -2.61
SCN1A-211ENST00000635893 C7orf71A4D174 169 aa-1.23□□□□□ -2.61
SCN1A-211ENST00000635893 NDUFS6O75380 124 aaKnown RBP-1.23□□□□□ -2.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms