RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 CALRP27797 417 aaKnown RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 HSD11B1P28845 292 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 OTX1P32242 354 aaPredicted RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 BMI1P35226 326 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 PPP1CCP36873 323 aaKnown RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 TGFBR2P37173 567 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 MYCNOSP40205 109 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 HAAOP46952 286 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 OMPP47874 163 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 SRP9P49458 86 aaKnown RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 RPL14P50914 215 aaKnown RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 DNAJB13P59910 316 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 OR2B8PP59922 312 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 ACTBP60709 375 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 MAGOHP61326 146 aaKnown RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 ATP5G2Q06055 141 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 IFFO1Q0D2I5 559 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 STX3Q13277 289 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 APOFQ13790 326 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 WFDC2Q14508 124 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 MMDQ15546 238 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 GRK1Q15835 563 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 HIST3H3Q16695 136 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 SMIM21Q3B7S5 101 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 Q3ZCU0 254 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 CCDC153Q494R4 210 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 SPANXN2Q5MJ10 180 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 FAM27D1Q5T7N8 215 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 Q5VSD8 79 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 TEX36Q5VZQ5 186 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 AMMECR1LQ6DCA0 310 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 OR2T5Q6IEZ7 315 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 ZNF322Q6U7Q0 402 aaPredicted RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 UNQ5815/PRO19632Q6UWF5 114 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 C4orf22Q6V702 233 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 SLC25A26Q70HW3 274 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 TRMT10CQ7L0Y3 403 aaKnown RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 CBLN2Q8IUK8 224 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 APRG1Q8IVJ8 170 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 UBE2DNLQ8IWF7 75 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 SLC25A29Q8N8R3 303 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 SPERTQ8NA61 448 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 DRAXINQ8NBI3 349 aaPredicted RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 LY6G5BQ8NDX9 201 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 MNS1Q8NEH6 495 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 OR8J2Q8NGG1 315 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 OR4D6Q8NGJ1 314 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 OR2T29Q8NH02 315 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 OR2T27Q8NH04 317 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 ANGPTL6Q8NI99 470 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 RPS4Y2Q8TD47 263 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 NEK7Q8TDX7 302 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 DYNLRB2Q8TF09 96 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 TSEN15Q8WW01 171 aaKnown RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 ACOT12Q8WYK0 555 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 AQP3Q92482 292 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 APOBEC3DQ96AK3 386 aaPredicted RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 RPEQ96AT9 228 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 ABHD14BQ96IU4 210 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 RNF170Q96K19 258 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 KCNS1Q96KK3 526 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 KCTD7Q96MP8 289 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 ZNF714Q96N38 554 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 RDH12Q96NR8 316 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 TRNT1Q96Q11 434 aaKnown RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 DERL3Q96Q80 235 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 TEAD3Q99594 435 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 APOL4Q9BPW4 351 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 PDCD1LG2Q9BQ51 273 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 ZNF426Q9BUY5 554 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 RTL8AQ9BWD3 113 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 HDHD2Q9H0R4 259 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 OR51V1Q9H2C8 321 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 TMEM133Q9H2Q1 129 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 BANF2Q9H503 90 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 C16orf95Q9H693 158 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 VSIRQ9H7M9 311 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 GEMIN7Q9H840 131 aaKnown RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 LINC00574Q9H8X3 128 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 NMNAT1Q9HAN9 279 aaPredicted RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 CACYBPQ9HB71 228 aaKnown RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 NMRK1Q9NWW6 199 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 COA4Q9NYJ1 87 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 USE1Q9NZ43 259 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 MTCH1Q9NZJ7 389 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 ZNF492Q9P255 531 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 STX18Q9P2W9 335 aaKnown RBP0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 PSME2Q9UL46 239 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 ARL2BPQ9Y2Y0 163 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 MED31Q9Y3C7 131 aa0.5□□□□□ -2.33
SMARCB1-209ENST00000635578 HMCN2Q8NDA2 5059 aa0.49□□□□□ -2.33
SMARCB1-209ENST00000635578 LPAP08519 4548 aa0.49□□□□□ -2.33
SMARCB1-209ENST00000635578 TRAV8-7A0A075B6U6 113 aa0.49□□□□□ -2.33
SMARCB1-209ENST00000635578 MEIKINA0A087WXM9 373 aa0.49□□□□□ -2.33
SMARCB1-209ENST00000635578 A0A096LPF7 62 aa0.49□□□□□ -2.33
SMARCB1-209ENST00000635578 TRAV3A0A0B4J244 114 aa0.49□□□□□ -2.33
SMARCB1-209ENST00000635578 TRAV38-1A0A0B4J264 116 aa0.49□□□□□ -2.33
SMARCB1-209ENST00000635578 TRAV41A0A0B4J266 112 aa0.49□□□□□ -2.33
SMARCB1-209ENST00000635578 A0A0B4J2C4 111 aa0.49□□□□□ -2.33
SMARCB1-209ENST00000635578 A0A1B0GTI1 187 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms