RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CACFD1Q9UGQ2 172 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 UBQLN2Q9UHD9 624 aa10.09□□□□□ -0.79
LINC00540-202ENST00000616974 K7EMT4 169 aa10.08□□□□□ -0.8
LINC00540-202ENST00000616974 IGHV4-30-4P0DP06 118 aa10.08□□□□□ -0.8
LINC00540-202ENST00000616974 ELLP55199 621 aaPredicted RBP10.08□□□□□ -0.8
LINC00540-202ENST00000616974 OXA1LQ15070 435 aa10.08□□□□□ -0.8
LINC00540-202ENST00000616974 LCN12Q6JVE5 192 aa10.08□□□□□ -0.8
LINC00540-202ENST00000616974 OR1S2Q8NGQ3 325 aa10.08□□□□□ -0.8
LINC00540-202ENST00000616974 PPP1R1CQ8WVI7 109 aa10.08□□□□□ -0.8
LINC00540-202ENST00000616974 TSC22D2O75157 780 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 RD3LP0DJH9 198 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 BCAP31P51572 246 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 YPEL3P61236 119 aaPredicted RBP10.07□□□□□ -0.8
LINC00540-202ENST00000616974 AKR1C1Q04828 323 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 FAM90A2PQ658T7 463 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 ETFRF1Q6IPR1 90 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 THAP8Q8NA92 274 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 RNF126Q9BV68 326 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 DEDDO75618 318 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 TOMM40O96008 361 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 FRMD6-AS1P0C7T7 363 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 CRYBB3P26998 211 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 NHLH2Q02577 135 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 SLC38A11Q08AI6 406 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 NOXA1Q86UR1 476 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 SBSPONQ8IVN8 264 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 VSIRQ9H7M9 311 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 TECRQ9NZ01 308 aaKnown RBP10.07□□□□□ -0.8
LINC00540-202ENST00000616974 STARD9Q9P2P6 4700 aa10.07□□□□□ -0.8
LINC00540-202ENST00000616974 LYZP61626 148 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 RGS21Q2M5E4 152 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 ODF3L2Q3SX64 289 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 WFDC3Q8IUB2 231 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 TMEM252Q8N6L7 170 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 RNF125Q96EQ8 232 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 NEURL2Q9BR09 285 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 LYRM2Q9NU23 88 aaPredicted RBP10.06□□□□□ -0.8
LINC00540-202ENST00000616974 DOK5Q9P104 306 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 SMAD5-AS1Q9Y6J3 95 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 TRAV30A0A087WSZ9 112 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 L7N2F9 121 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 TAS2R30P59541 319 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 VAMP2P63027 116 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 LEMD1Q68G75 181 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 RBPMS2Q6ZRY4 209 aaKnown RBP10.06□□□□□ -0.8
LINC00540-202ENST00000616974 TCF24Q7RTU0 167 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 MARC2Q969Z3 335 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 NMES1Q9C002 83 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 U3KQE9 123 aa10.06□□□□□ -0.8
LINC00540-202ENST00000616974 PRB4P10163 310 aaPredicted RBP10.05□□□□□ -0.8
LINC00540-202ENST00000616974 ATP5IP56385 69 aaPredicted RBP10.05□□□□□ -0.8
LINC00540-202ENST00000616974 APRG1Q8IVJ8 170 aa10.05□□□□□ -0.8
LINC00540-202ENST00000616974 Q8WTZ3 238 aa10.05□□□□□ -0.8
LINC00540-202ENST00000616974 TRGV9Q99603 122 aa10.05□□□□□ -0.8
LINC00540-202ENST00000616974 TSPAN4O14817 238 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 MPC2O95563 127 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 NPPCP23582 126 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 P2RY1P47900 373 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 RPP30P78346 268 aaKnown RBP10.04□□□□□ -0.8
LINC00540-202ENST00000616974 OR10P1Q8NGE3 313 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 C17orf77Q96MU5 243 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 UHRF2Q96PU4 802 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 GINS3Q9BRX5 216 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 DEFB1P60022 68 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 TMEM144Q7Z5S9 345 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 METTL26Q96S19 204 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 MGST2Q99735 147 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 MBD2Q9UBB5 411 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 RFNGQ9Y644 331 aa10.04□□□□□ -0.8
LINC00540-202ENST00000616974 RBMY1BA6NDE4 496 aaKnown RBP10.03□□□□□ -0.8
LINC00540-202ENST00000616974 RBMY1EA6NEQ0 496 aaKnown RBP10.03□□□□□ -0.8
LINC00540-202ENST00000616974 OR11H12B2RN74 326 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 BUB3O43684 328 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 RBMY1DP0C7P1 496 aaKnown RBP10.03□□□□□ -0.8
LINC00540-202ENST00000616974 ORM2P19652 201 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 RPL11P62913 178 aaKnown RBP10.03□□□□□ -0.8
LINC00540-202ENST00000616974 DLK1P80370 383 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 CHAC2Q8WUX2 184 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 GLMPQ8WWB7 406 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 MS4A6AQ9H2W1 248 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 KMT2CQ8NEZ4 4911 aaKnown RBP10.03□□□□□ -0.8
LINC00540-202ENST00000616974 UBE2L5PA0A1B0GUS4 154 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 SNRPCP09234 159 aaKnown RBP10.03□□□□□ -0.8
LINC00540-202ENST00000616974 MORN5Q5VZ52 161 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 PATE2Q6UY27 113 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 GTSCR1Q86UQ5 136 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 BPIFCQ8NFQ6 507 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 OR2K2Q8NGT1 345 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 THAP6Q8TBB0 222 aa10.03□□□□□ -0.8
LINC00540-202ENST00000616974 HNRNPCP07910 306 aaKnown RBP eCLIP10.02□□□□□ -0.81
LINC00540-202ENST00000616974 SULT1A1P50225 295 aa10.02□□□□□ -0.81
LINC00540-202ENST00000616974 EWSR1Q01844 656 aaKnown RBP eCLIP10.02□□□□□ -0.81
LINC00540-202ENST00000616974 CLINT1Q14677 625 aa10.02□□□□□ -0.81
LINC00540-202ENST00000616974 STXBP6Q8NFX7 210 aa10.02□□□□□ -0.81
LINC00540-202ENST00000616974 B9D2Q9BPU9 175 aa10.02□□□□□ -0.81
LINC00540-202ENST00000616974 MED28Q9H204 178 aa10.02□□□□□ -0.81
LINC00540-202ENST00000616974 RETNQ9HD89 108 aa10.02□□□□□ -0.81
LINC00540-202ENST00000616974 LYSTQ99698 3801 aa10.02□□□□□ -0.81
LINC00540-202ENST00000616974 G3V3Q6 166 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 SMLR1H3BR10 107 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms