RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 UBE2L6O14933 153 aa11.55□□□□□ -0.56
CPSF1-212ENST00000616140 PPIFP30405 207 aaKnown RBP11.55□□□□□ -0.56
CPSF1-212ENST00000616140 PYY3Q5JQD4 70 aa11.55□□□□□ -0.56
CPSF1-212ENST00000616140 LINC00469Q8N7U9 141 aa11.55□□□□□ -0.56
CPSF1-212ENST00000616140 CCL19Q99731 98 aa11.55□□□□□ -0.56
CPSF1-212ENST00000616140 TRBV6-6A0A0A6YYG2 114 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 FAM71F2Q6NXP2 309 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 MGST2Q99735 147 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 NOTCH4Q99466 2003 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 MYOD1P15172 320 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 FOXL1Q12952 345 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 C1orf147Q96MC9 270 aaPredicted RBP11.54□□□□□ -0.56
CPSF1-212ENST00000616140 CSRP1P21291 193 aaKnown RBP11.54□□□□□ -0.56
CPSF1-212ENST00000616140 FOXL2NBQ6ZUU3 175 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 NIT1Q86X76 327 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 TSKUQ8WUA8 353 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 NEUROG1Q92886 237 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 MED13Q9UHV7 2174 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 LYL1P12980 280 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 RHOGP84095 191 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 CIRBPQ14011 172 aaKnown RBP11.54□□□□□ -0.56
CPSF1-212ENST00000616140 MEIG1Q5JSS6 88 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 TMEM256Q8N2U0 113 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 SLC25A15Q9Y619 301 aa11.54□□□□□ -0.56
CPSF1-212ENST00000616140 FNDC1Q4ZHG4 1894 aaPredicted RBP11.53□□□□□ -0.56
CPSF1-212ENST00000616140 MLNRO43193 412 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 CFPP27918 469 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 NTF4P34130 210 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 TRPM7Q96QT4 1865 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 ANKHD1Q8IWZ3 2542 aaKnown RBP11.53□□□□□ -0.56
CPSF1-212ENST00000616140 TRAV9-2A0A087WT02 112 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 PMS2P5A8MQ11 134 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 NUDT10Q8NFP7 164 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 FAM168AQ92567 244 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 NUDT11Q96G61 164 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 PLXNA3P51805 1871 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 PRR31Q5SQ13 230 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 ASCL4Q6XD76 172 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 Q6ZS49 121 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 MDS2Q8NDY4 140 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 PTPN13Q12923 2485 aa11.53□□□□□ -0.56
CPSF1-212ENST00000616140 PPP1R17O96001 155 aa11.52□□□□□ -0.56
CPSF1-212ENST00000616140 SUMO2P61956 95 aaKnown RBP11.52□□□□□ -0.56
CPSF1-212ENST00000616140 MRPL16Q9NX20 251 aaKnown RBP11.52□□□□□ -0.56
CPSF1-212ENST00000616140 COL4A6Q14031 1691 aa11.52□□□□□ -0.56
CPSF1-212ENST00000616140 IGKV1-6A0A0C4DH72 117 aa11.52□□□□□ -0.56
CPSF1-212ENST00000616140 C15orf62A8K5M9 175 aa11.52□□□□□ -0.56
CPSF1-212ENST00000616140 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.52□□□□□ -0.56
CPSF1-212ENST00000616140 TMEM50AO95807 157 aa11.52□□□□□ -0.56
CPSF1-212ENST00000616140 MST1LQ2TV78 715 aa11.52□□□□□ -0.56
CPSF1-212ENST00000616140 GLMPQ8WWB7 406 aa11.52□□□□□ -0.56
CPSF1-212ENST00000616140 ASCL2Q99929 193 aa11.52□□□□□ -0.56
CPSF1-212ENST00000616140 GZMBP10144 247 aa11.52□□□□□ -0.57
CPSF1-212ENST00000616140 PSG1P11464 419 aa11.52□□□□□ -0.57
CPSF1-212ENST00000616140 CD33P20138 364 aa11.52□□□□□ -0.57
CPSF1-212ENST00000616140 NPIPB5A8MRT5 1133 aa11.52□□□□□ -0.57
CPSF1-212ENST00000616140 C8orf46Q8TAG6 207 aa11.52□□□□□ -0.57
CPSF1-212ENST00000616140 APOMO95445 188 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 ZNF585BQ52M93 769 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 TMEM200BQ69YZ2 307 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 FBLN7Q53RD9 439 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 FAM90A2PQ658T7 463 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 SPSB3Q6PJ21 355 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 EXOC3-AS1Q8N2X6 119 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 LINC00527Q9UJ94 153 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 IGKV1D-17A0A075B6S4 117 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 TGFAP01135 160 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 LEPP41159 167 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 ZNF672Q499Z4 452 aaPredicted RBP11.51□□□□□ -0.57
CPSF1-212ENST00000616140 TNFRSF14Q92956 283 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 VKORC1Q9BQB6 163 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 SLC50A1Q9BRV3 221 aa11.51□□□□□ -0.57
CPSF1-212ENST00000616140 HBDP02042 147 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 KLF17Q5JT82 389 aaPredicted RBP11.5□□□□□ -0.57
CPSF1-212ENST00000616140 TNFRSF18Q9Y5U5 241 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 IGHV2-26A0A0B4J1V2 119 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 CACNG7P62955 275 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 SPCS1Q9Y6A9 102 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 MGAMO43451 1857 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 FAM181BA6NEQ2 426 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 H7C1H1 209 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 NDUFA3O95167 84 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 IGHV1-8P0DP01 117 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 RNASE4P34096 147 aaKnown RBP11.5□□□□□ -0.57
CPSF1-212ENST00000616140 SRSF6Q13247 344 aaKnown RBP11.5□□□□□ -0.57
CPSF1-212ENST00000616140 OR10J3Q5JRS4 329 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 SCRT1Q9BWW7 348 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 MLANAQ16655 118 aa11.5□□□□□ -0.57
CPSF1-212ENST00000616140 HELZP42694 1942 aaKnown RBP11.5□□□□□ -0.57
CPSF1-212ENST00000616140 H3BUT2 72 aa11.49□□□□□ -0.57
CPSF1-212ENST00000616140 ETV2O00321 342 aaPredicted RBP11.49□□□□□ -0.57
CPSF1-212ENST00000616140 COLCA1Q6ZS62 124 aa11.49□□□□□ -0.57
CPSF1-212ENST00000616140 ZSWIM8A7E2V4 1837 aa11.49□□□□□ -0.57
CPSF1-212ENST00000616140 A0A1B0GWB2 263 aa11.49□□□□□ -0.57
CPSF1-212ENST00000616140 TMEM167AQ8TBQ9 72 aa11.49□□□□□ -0.57
CPSF1-212ENST00000616140 TMEM178BH3BS89 294 aa11.49□□□□□ -0.57
CPSF1-212ENST00000616140 PSMG4Q5JS54 123 aa11.49□□□□□ -0.57
CPSF1-212ENST00000616140 MRAP2Q96G30 205 aa11.49□□□□□ -0.57
CPSF1-212ENST00000616140 THSD7BQ9C0I4 1608 aa11.49□□□□□ -0.57
CPSF1-212ENST00000616140 TSC2P49815 1807 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms