RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TRBV7-1A0A0A6YYK4 115 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 TOMM40O96008 361 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 STAG3L2P0CL84 134 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 STAG3L3P0CL85 134 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 TPPP2P59282 170 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 HILS1P60008 231 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 RHOBP62745 196 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 ATP5G2Q06055 141 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 FAM78BQ5VT40 261 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 LCNL1Q6ZST4 164 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 MIR17HGQ75NE6 70 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 COMMD1Q8N668 190 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 EEF1AKMT3Q96AZ1 226 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 DNAJC4Q9NNZ3 241 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 A0A1W2PPV4 95 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 CLEC3BP05452 202 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 RNASE1P07998 156 aaKnown RBP11.06□□□□□ -0.64
USP39-220ENST00000613444 RD3LP0DJH9 198 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 RAB9AP51151 201 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 KIAA0141Q14154 515 aaPredicted RBP11.06□□□□□ -0.64
USP39-220ENST00000613444 MORN5Q5VZ52 161 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 Q6ZSV7 163 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 USMG5Q96IX5 58 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 FAM210AQ96ND0 272 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 ATP6V0BQ99437 205 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 DOK5Q9P104 306 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 FUT9Q9Y231 359 aa11.06□□□□□ -0.64
USP39-220ENST00000613444 PF4V1P10720 104 aa11.05□□□□□ -0.64
USP39-220ENST00000613444 GPR183P32249 361 aa11.05□□□□□ -0.64
USP39-220ENST00000613444 ZNF491Q8N8L2 437 aa11.05□□□□□ -0.64
USP39-220ENST00000613444 TMPRSS5Q9H3S3 457 aa11.05□□□□□ -0.64
USP39-220ENST00000613444 WI2-2373I1.2A0A1W2PRP0 233 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 TMEM89A2RUT3 159 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 CD5P06127 495 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 CLEC19AQ6UXS0 136 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 OR1L4Q8NGR5 311 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 ZNF418Q8TF45 676 aaPredicted RBP11.04□□□□□ -0.64
USP39-220ENST00000613444 UHRF2Q96PU4 802 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 PFDN5Q99471 154 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 ELOA3CA0A087WX78 387 aaPredicted RBP11.04□□□□□ -0.64
USP39-220ENST00000613444 COX7A2P2O60397 106 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 OR2C1O95371 312 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 ORM2P19652 201 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 PMS2P11Q13670 270 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 C10orf113Q5VZT2 155 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 OR51G1Q8NGK1 321 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 OR1B1Q8NGR6 318 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 FAM167A-AS1Q96KT0 104 aa11.04□□□□□ -0.64
USP39-220ENST00000613444 C9JQL5 133 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 FABP1P07148 127 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 ARL14EPLP0DKL9 152 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 GUK1Q16774 197 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 UQCC3Q6UW78 93 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 MYOZ3Q8TDC0 251 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 ZNF503Q96F45 646 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 MRPL32Q9BYC8 188 aaKnown RBP11.03□□□□□ -0.64
USP39-220ENST00000613444 TMEM231Q9H6L2 316 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 GAR1Q9NY12 217 aaKnown RBP11.03□□□□□ -0.64
USP39-220ENST00000613444 MRPL27Q9P0M9 148 aaKnown RBP11.03□□□□□ -0.64
USP39-220ENST00000613444 NUPL2O15504 423 aaKnown RBP11.03□□□□□ -0.64
USP39-220ENST00000613444 TGOLN2O43493 480 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 HYPMO75409 117 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 RPL15P61313 204 aaKnown RBP11.03□□□□□ -0.64
USP39-220ENST00000613444 LYZP61626 148 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 LINC00305Q7Z4B0 112 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 RNF152Q8N8N0 203 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 RNF2Q99496 336 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 RARRES2Q99969 163 aa11.03□□□□□ -0.64
USP39-220ENST00000613444 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.02□□□□□ -0.65
USP39-220ENST00000613444 TRAV5A0A0B4J249 113 aa11.02□□□□□ -0.65
USP39-220ENST00000613444 TRBV12-3P01733 135 aa11.02□□□□□ -0.65
USP39-220ENST00000613444 FOXE3Q13461 319 aa11.02□□□□□ -0.65
USP39-220ENST00000613444 USF2Q15853 346 aaPredicted RBP11.02□□□□□ -0.65
USP39-220ENST00000613444 TOR2AQ5JU69 321 aa11.02□□□□□ -0.65
USP39-220ENST00000613444 ZNF343Q6P1L6 599 aa11.02□□□□□ -0.65
USP39-220ENST00000613444 TEX38Q6PEX7 206 aa11.02□□□□□ -0.65
USP39-220ENST00000613444 RNF125Q96EQ8 232 aa11.02□□□□□ -0.65
USP39-220ENST00000613444 SLC25A2Q9BXI2 301 aa11.02□□□□□ -0.65
USP39-220ENST00000613444 A0A0G2JLM5 398 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 RBFOX3A6NFN3 312 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 CXorf1O96002 111 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 IL4P05112 153 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 C8orf88P0DMB2 117 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 SLC35B1P78383 322 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 Q8WTZ3 238 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 TECRQ9NZ01 308 aaKnown RBP11.01□□□□□ -0.65
USP39-220ENST00000613444 GNG13Q9P2W3 67 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 PUS1Q9Y606 427 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP39-220ENST00000613444 PPP5D1E7EU14 171 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 IGHV3-11P01762 117 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 RPLP1P05386 114 aaKnown RBP11.01□□□□□ -0.65
USP39-220ENST00000613444 ELANEP08246 267 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 HAGHQ16775 308 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 ZNF600Q6ZNG1 722 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 WIPF2Q8TF74 440 aaPredicted RBP11.01□□□□□ -0.65
USP39-220ENST00000613444 ZFAND3Q9H8U3 227 aa11.01□□□□□ -0.65
USP39-220ENST00000613444 IGHV3-35A0A0C4DH35 117 aa11□□□□□ -0.65
USP39-220ENST00000613444 LOC102723971A0A1B0GUV8 181 aa11□□□□□ -0.65
USP39-220ENST00000613444 I3L521 148 aa11□□□□□ -0.65
USP39-220ENST00000613444 SCGB2A1O75556 95 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms