RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TPST1O60507 370 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 OR2A4O95047 310 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 SOX14O95416 240 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 KRT75O95678 551 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 MOSP00540 346 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 TRBV12-3P01733 135 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 IGHV3-7P01780 117 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 TRGV3P03979 118 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 SCTP09683 121 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 OR4E1P0C645 316 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 DTYMKP23919 212 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 NFYBP25208 207 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 IFNGR2P38484 337 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 MAGEA12P43365 314 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 OR1E2P47887 323 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 REG1BP48304 166 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 RAP1AP62834 184 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 FAM3AP98173 230 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 PRDX4Q13162 271 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 KIAA0087Q14695 138 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 C12orf74Q32Q52 190 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 TTC32Q5I0X7 151 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 HEPN1Q6WQI6 88 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 GID4Q8IVV7 300 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 TMEM61Q8N0U2 210 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 C11orf72Q8NBR9 251 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 ZNF680Q8NEM1 530 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 TEX47Q8TBZ9 253 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 OR5P3Q8WZ94 311 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 SPTSSAQ969W0 71 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 PPP3R2Q96LZ3 170 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 SPACA5Q96QH8 159 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 SLC25A22Q9H936 323 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 PRR34Q9NV39 138 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 FAM206AQ9NX38 181 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 RASL12Q9NYN1 266 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 TMEM216Q9P0N5 145 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 IGLV8-61A0A075B6I0 122 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 IGHV1-3A0A0C4DH29 117 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 EFCAB9A8MZ26 197 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 ZNF736B4DX44 427 aaPredicted RBP2.92□□□□□ -1.94
LINC00540-201ENST00000611481 TMEM238C9JI98 176 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 H0YJX3 145 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 H3BQF6 201 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 TAAR5O14804 337 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 MYL12BO14950 172 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 ENTPD6O75354 484 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 ZNF737O75373 536 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 GNAO1P09471 354 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 IGHV3-43DP0DP04 118 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 HIST1H1EP10412 219 aaKnown RBP2.92□□□□□ -1.94
LINC00540-201ENST00000611481 FOLR2P14207 255 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 RAB3AP20336 220 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 PSMA1P25786 263 aaKnown RBP2.92□□□□□ -1.94
LINC00540-201ENST00000611481 G0S2P27469 103 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 ALDH3A1P30838 453 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 CEACAM6P40199 344 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 PSMD7P51665 324 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 FGF8P55075 233 aaPredicted RBP2.92□□□□□ -1.94
LINC00540-201ENST00000611481 RANP62826 216 aaKnown RBP2.92□□□□□ -1.94
LINC00540-201ENST00000611481 CD300CQ08708 224 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 ARFRP1Q13795 201 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 PRSS8Q16651 343 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 COA6Q5JTJ3 125 aaKnown RBP2.92□□□□□ -1.94
LINC00540-201ENST00000611481 LAMTOR1Q6IAA8 161 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 ZNF613Q6PF04 617 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 HAGHLQ6PII5 290 aaPredicted RBP2.92□□□□□ -1.94
LINC00540-201ENST00000611481 Q8NAQ8 132 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 OR10G9Q8NGN4 311 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 ZNRF2Q8NHG8 242 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 PFN4Q8NHR9 129 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 HAVCR2Q8TDQ0 301 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 BLNKQ8WV28 456 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 AQP3Q92482 292 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 AP3S1Q92572 193 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 LEAP2Q969E1 77 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 IL22RA2Q969J5 263 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 DGCR14Q96DF8 476 aaKnown RBP2.92□□□□□ -1.94
LINC00540-201ENST00000611481 SMIM12Q96EX1 92 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 PGLYRP3Q96LB9 341 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 PRRT1Q99946 306 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 CHST6Q9GZX3 395 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 OR51I2Q9H344 312 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 CELA1Q9UNI1 258 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 ARL2BPQ9Y2Y0 163 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 DNAJC15Q9Y5T4 150 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 MPC1Q9Y5U8 109 aa2.92□□□□□ -1.94
LINC00540-201ENST00000611481 TRGV10A0A0A0MS01 117 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 IGHV3-35A0A0C4DH35 117 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 A0A0J9YXV3 536 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 ZNF253O75346 499 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 GATBO75879 557 aaKnown RBP2.91□□□□□ -1.94
LINC00540-201ENST00000611481 S1PR2O95136 353 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 TSPAN19P0C672 248 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 TSPOP30536 169 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 CACNG7P62955 275 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 NDPQ00604 133 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 DEFA5Q01523 94 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 MMDQ15546 238 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 GRK1Q15835 563 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms