RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 S100A9P06702 114 aaKnown RBP3.96□□□□□ -1.78
VRK3-226ENST00000602029 IGKV1-13P0DP09 117 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 PAX9P55771 341 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 POLR2GP62487 172 aaKnown RBP eCLIP3.96□□□□□ -1.78
VRK3-226ENST00000602029 SRSF3P84103 164 aaKnown RBP3.96□□□□□ -1.78
VRK3-226ENST00000602029 AKR1C1Q04828 323 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 ATP5G2Q06055 141 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 PSG5Q15238 335 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 TNXAQ16473 311 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 VWC2Q2TAL6 325 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 LINC01559Q495D7 138 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 AKIRIN2Q53H80 203 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 TMEM41BQ5BJD5 291 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 SLC25A24Q6NUK1 477 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 TMEM88Q6PEY1 159 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 SPSB3Q6PJ21 355 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 TMEM14EPQ6UXP3 125 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 SLC16A13Q7RTY0 426 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 CBLN2Q8IUK8 224 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 Q8N1Y9 231 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 DEFB125Q8N687 156 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 HSD17B11Q8NBQ5 300 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.96□□□□□ -1.78
VRK3-226ENST00000602029 OR52E5Q8NH55 327 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 OR51H1Q8NH63 302 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 SFT2D1Q8WV19 159 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 HIST1H2BAQ96A08 127 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 RHOVQ96L33 236 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 YPEL2Q96QA6 119 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 SMIM3Q9BZL3 60 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 MAGT1Q9H0U3 335 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 IFI27L2Q9H2X8 130 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 WFDC1Q9HC57 220 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 CCL28Q9NRJ3 127 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 TPSG1Q9NRR2 321 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.96□□□□□ -1.78
VRK3-226ENST00000602029 SLC35D1Q9NTN3 355 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 C19orf73Q9NVV2 129 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 PEF1Q9UBV8 284 aaKnown RBP3.96□□□□□ -1.78
VRK3-226ENST00000602029 ARL2-SNX15V9GYD0 113 aa3.96□□□□□ -1.78
VRK3-226ENST00000602029 ELOA3CA0A087WX78 387 aaPredicted RBP3.95□□□□□ -1.78
VRK3-226ENST00000602029 ZNF320A2RRD8 509 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 SMCO3A2RU48 225 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 IZUMO1RA6ND01 250 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 FAM24AA6NFZ4 105 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 C5orf52A6NGY3 159 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 ZNF98A6NK75 572 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 M0R036 132 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 NUPL2O15504 423 aaKnown RBP3.95□□□□□ -1.78
VRK3-226ENST00000602029 NDUFA3O95167 84 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 IGLV2-14P01704 120 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 SRP19P09132 144 aaKnown RBP3.95□□□□□ -1.78
VRK3-226ENST00000602029 P0C879 139 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 CT45A6P0DMU7 189 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 CT45A5P0DMU8 189 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 CT45A7P0DMV0 189 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 BCL2P10415 239 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 RAB5AP20339 215 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 PSMB3P49720 205 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 RND2P52198 227 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 UBE2KP61086 200 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 RHOGP84095 191 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 TNFRSF9Q07011 255 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 EIF4EBP1Q13541 118 aaPredicted RBP3.95□□□□□ -1.78
VRK3-226ENST00000602029 RTL8BQ17RB0 113 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 VMA21Q3ZAQ7 101 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 CD300EQ496F6 205 aaPredicted RBP3.95□□□□□ -1.78
VRK3-226ENST00000602029 ZNF562Q6V9R5 426 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 ODF3L1Q8IXM7 274 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 LILRB2Q8N423 598 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 TCTEX1D2Q8WW35 142 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 TMEM190Q8WZ59 177 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 GPR146Q96CH1 333 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 ADTRPQ96IZ2 230 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 HARBI1Q96MB7 349 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 TMEM147Q9BVK8 224 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 WDR61Q9GZS3 305 aaKnown RBP3.95□□□□□ -1.78
VRK3-226ENST00000602029 WFDC10AQ9H1F0 79 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 SH3BGRL3Q9H299 93 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 TMEM231Q9H6L2 316 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 RPS10P5Q9NQ39 176 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 SIGLEC8Q9NYZ4 499 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 PSENENQ9NZ42 101 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 OR1A1Q9P1Q5 309 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 VAX2Q9UIW0 290 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 VPS13DQ5THJ4 4388 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 KIAA2026Q5HYC2 2103 aa3.95□□□□□ -1.78
VRK3-226ENST00000602029 TRBV24-1A0A075B6N3 115 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 CTXND1A0A1B0GTU2 59 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 NUPR2A6NF83 97 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 A8MZ25 164 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 H3BQ15 152 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 H3BUA1 57 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 PDE6DO43924 150 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 CST7O76096 145 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 OR2C1O95371 312 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 HPRT1P00492 218 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 IGKV1-5P01602 117 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 TRBV12-3P01733 135 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 IGKV1-16P04430 117 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 218 ms