RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 COL7A1Q02388 2944 aa10.87□□□□□ -0.67
VRK3-206ENST00000594090 IGKV3-7A0A075B6H7 116 aa10.86□□□□□ -0.67
VRK3-206ENST00000594090 C7orf66A4D0T2 115 aa10.86□□□□□ -0.67
VRK3-206ENST00000594090 CCNKO75909 580 aa10.86□□□□□ -0.67
VRK3-206ENST00000594090 DFFBO76075 338 aa10.86□□□□□ -0.67
VRK3-206ENST00000594090 HNRNPCP07910 306 aaKnown RBP eCLIP10.86□□□□□ -0.67
VRK3-206ENST00000594090 METTL15P1P0C7V9 234 aa10.86□□□□□ -0.67
VRK3-206ENST00000594090 P2RY1P47900 373 aa10.86□□□□□ -0.67
VRK3-206ENST00000594090 TMEM14EPQ6UXP3 125 aa10.86□□□□□ -0.67
VRK3-206ENST00000594090 TRGV9Q99603 122 aa10.86□□□□□ -0.67
VRK3-206ENST00000594090 UBQLN2Q9UHD9 624 aa10.86□□□□□ -0.67
VRK3-206ENST00000594090 LSM5Q9Y4Y9 91 aaKnown RBP10.86□□□□□ -0.67
VRK3-206ENST00000594090 U3KQE9 123 aa10.86□□□□□ -0.67
VRK3-206ENST00000594090 RBMY1BA6NDE4 496 aaKnown RBP10.85□□□□□ -0.67
VRK3-206ENST00000594090 RBMY1EA6NEQ0 496 aaKnown RBP10.85□□□□□ -0.67
VRK3-206ENST00000594090 FABP1P07148 127 aa10.85□□□□□ -0.67
VRK3-206ENST00000594090 RBMY1DP0C7P1 496 aaKnown RBP10.85□□□□□ -0.67
VRK3-206ENST00000594090 AKR1C1Q04828 323 aa10.85□□□□□ -0.67
VRK3-206ENST00000594090 IL15RAQ13261 267 aa10.85□□□□□ -0.67
VRK3-206ENST00000594090 ODF3L2Q3SX64 289 aa10.85□□□□□ -0.67
VRK3-206ENST00000594090 LINC00322Q6ZN03 302 aaPredicted RBP10.85□□□□□ -0.67
VRK3-206ENST00000594090 RNF125Q96EQ8 232 aa10.85□□□□□ -0.67
VRK3-206ENST00000594090 TM2D3Q9BRN9 247 aa10.85□□□□□ -0.67
VRK3-206ENST00000594090 RABAC1Q9UI14 185 aa10.85□□□□□ -0.67
VRK3-206ENST00000594090 U3KQK5 164 aa10.85□□□□□ -0.67
VRK3-206ENST00000594090 L7N2F9 121 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 TFPI2P48307 235 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 VAMP2P63027 116 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 HAGHQ16775 308 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 GBGT1Q8N5D6 347 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 GRAMD2BQ96HH9 432 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 FAM110AQ9BQ89 295 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 PBDC1Q9BVG4 233 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 MS4A6AQ9H2W1 248 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 C11orf1Q9H5F2 150 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 SMCO3A2RU48 225 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 GOSR2O14653 212 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 S100A10P60903 97 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 LYZP61626 148 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 RRAS2P62070 204 aaPredicted RBP10.84□□□□□ -0.67
VRK3-206ENST00000594090 RPL11P62913 178 aaKnown RBP10.84□□□□□ -0.67
VRK3-206ENST00000594090 PAFAH1B2P68402 229 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 DLK1P80370 383 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 OR2F1Q13607 317 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 C16orf54Q6UWD8 224 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 TMEM144Q7Z5S9 345 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 OR10P1Q8NGE3 313 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 GLMPQ8WWB7 406 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 CITED4Q96RK1 184 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 ZMAT4Q9H898 229 aa10.84□□□□□ -0.67
VRK3-206ENST00000594090 TRAV2A0A0B4J234 112 aa10.83□□□□□ -0.68
VRK3-206ENST00000594090 FNDC10F2Z333 226 aa10.83□□□□□ -0.68
VRK3-206ENST00000594090 DNASE2O00115 360 aaPredicted RBP10.83□□□□□ -0.68
VRK3-206ENST00000594090 PTTG1O95997 202 aa10.83□□□□□ -0.68
VRK3-206ENST00000594090 PVALBP20472 110 aaPredicted RBP10.83□□□□□ -0.68
VRK3-206ENST00000594090 EIF2B2P49770 351 aaKnown RBP10.83□□□□□ -0.68
VRK3-206ENST00000594090 ARL16Q0P5N6 197 aa10.83□□□□□ -0.68
VRK3-206ENST00000594090 RAB32Q13637 225 aa10.83□□□□□ -0.68
VRK3-206ENST00000594090 RCHY1Q96PM5 261 aa10.83□□□□□ -0.68
VRK3-206ENST00000594090 HUWE1Q7Z6Z7 4374 aaKnown RBP10.82□□□□□ -0.68
VRK3-206ENST00000594090 BUB3O43684 328 aa10.82□□□□□ -0.68
VRK3-206ENST00000594090 SIX6O95475 246 aa10.82□□□□□ -0.68
VRK3-206ENST00000594090 NUP62P37198 522 aaPredicted RBP10.82□□□□□ -0.68
VRK3-206ENST00000594090 BCAP31P51572 246 aa10.82□□□□□ -0.68
VRK3-206ENST00000594090 WFDC3Q8IUB2 231 aa10.82□□□□□ -0.68
VRK3-206ENST00000594090 STXBP6Q8NFX7 210 aa10.82□□□□□ -0.68
VRK3-206ENST00000594090 MAP6D1Q9H9H5 199 aa10.82□□□□□ -0.68
VRK3-206ENST00000594090 MGAT4CQ9UBM8 478 aa10.82□□□□□ -0.68
VRK3-206ENST00000594090 HELTA6NFD8 242 aa10.81□□□□□ -0.68
VRK3-206ENST00000594090 CFDP00746 253 aaPredicted RBP10.81□□□□□ -0.68
VRK3-206ENST00000594090 CAV2P51636 162 aa10.81□□□□□ -0.68
VRK3-206ENST00000594090 CMC4P56277 68 aaPredicted RBP10.81□□□□□ -0.68
VRK3-206ENST00000594090 TMEM182Q6ZP80 229 aaPredicted RBP10.81□□□□□ -0.68
VRK3-206ENST00000594090 SPATA25Q9BR10 227 aa10.81□□□□□ -0.68
VRK3-206ENST00000594090 GGTLC1Q9BX51 225 aa10.81□□□□□ -0.68
VRK3-206ENST00000594090 NMES1Q9C002 83 aa10.81□□□□□ -0.68
VRK3-206ENST00000594090 NPVFQ9HCQ7 196 aa10.81□□□□□ -0.68
VRK3-206ENST00000594090 PFDN2Q9UHV9 154 aa10.81□□□□□ -0.68
VRK3-206ENST00000594090 LOC102724200A0A096LPH7 203 aaPredicted RBP10.8□□□□□ -0.68
VRK3-206ENST00000594090 FAM24AA6NFZ4 105 aa10.8□□□□□ -0.68
VRK3-206ENST00000594090 K7EQG2 157 aa10.8□□□□□ -0.68
VRK3-206ENST00000594090 SSNA1O43805 119 aa10.8□□□□□ -0.68
VRK3-206ENST00000594090 GATA2P23769 480 aaPredicted RBP10.8□□□□□ -0.68
VRK3-206ENST00000594090 CYP2G1PQ6ZSU1 146 aa10.8□□□□□ -0.68
VRK3-206ENST00000594090 APRG1Q8IVJ8 170 aa10.8□□□□□ -0.68
VRK3-206ENST00000594090 FAM24BQ8N5W8 94 aa10.8□□□□□ -0.68
VRK3-206ENST00000594090 STPG3Q8N7X2 389 aa10.8□□□□□ -0.68
VRK3-206ENST00000594090 BPIFCQ8NFQ6 507 aa10.8□□□□□ -0.68
VRK3-206ENST00000594090 DCANP1Q8TF63 244 aa10.8□□□□□ -0.68
VRK3-206ENST00000594090 GGACTQ9BVM4 153 aa10.8□□□□□ -0.68
VRK3-206ENST00000594090 LYRM2Q9NU23 88 aaPredicted RBP10.8□□□□□ -0.68
VRK3-206ENST00000594090 DEDDO75618 318 aa10.79□□□□□ -0.68
VRK3-206ENST00000594090 CST7O76096 145 aa10.79□□□□□ -0.68
VRK3-206ENST00000594090 AP2S1P53680 142 aaPredicted RBP10.79□□□□□ -0.68
VRK3-206ENST00000594090 H2BFSP57053 126 aa10.79□□□□□ -0.68
VRK3-206ENST00000594090 SLC38A11Q08AI6 406 aa10.79□□□□□ -0.68
VRK3-206ENST00000594090 ZNF124Q15973 351 aa10.79□□□□□ -0.68
VRK3-206ENST00000594090 SIGLEC15Q6ZMC9 328 aa10.79□□□□□ -0.68
VRK3-206ENST00000594090 WWC2-AS2Q96NR7 200 aa10.79□□□□□ -0.68
VRK3-206ENST00000594090 IGSF23A1L1A6 192 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms