RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 WIPF2Q8TF74 440 aaPredicted RBP8.12□□□□□ -1.11
VPS4B-204ENST00000589604 ZNF414Q96IQ9 312 aa8.12□□□□□ -1.11
VPS4B-204ENST00000589604 RAX2Q96IS3 184 aa8.12□□□□□ -1.11
VPS4B-204ENST00000589604 TRGV9Q99603 122 aa8.12□□□□□ -1.11
VPS4B-204ENST00000589604 CDIP1Q9H305 208 aa8.12□□□□□ -1.11
VPS4B-204ENST00000589604 SLC39A9Q9NUM3 307 aa8.12□□□□□ -1.11
VPS4B-204ENST00000589604 TRAV1-1A0A0B4J248 108 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 TCRBV4S1A1TA0A5B7 111 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 CLPSL1A2RUU4 121 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 PGPEP1LA6NFU8 196 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 SEC14L6B5MCN3 397 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 EIF3GO75821 320 aaKnown RBP eCLIP8.11□□□□□ -1.11
VPS4B-204ENST00000589604 BRI3O95415 125 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 TSPAN15O95858 294 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 B2MP61769 119 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 RAB31Q13636 194 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 OR10G4Q8NGN3 311 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 OR10G9Q8NGN4 311 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 OR10G7Q8NGN6 311 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 OR4F5Q8NH21 305 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 SPATA3Q8NHX4 192 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 HRH4Q9H3N8 390 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 FBXL7Q9UJT9 491 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 RNF114Q9Y508 228 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 S4R3C0 116 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 FBN3Q75N90 2809 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 AP4M1O00189 453 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 CLN5O75503 358 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 IGLV1-40P01703 118 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 MBP02144 154 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 H2AFB1P0C5Y9 115 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 HIST1H1BP16401 226 aaKnown RBP8.11□□□□□ -1.11
VPS4B-204ENST00000589604 ZNF616Q08AN1 781 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 ACOT6Q3I5F7 207 aaPredicted RBP8.11□□□□□ -1.11
VPS4B-204ENST00000589604 EIF4E3Q8N5X7 224 aaKnown RBP8.11□□□□□ -1.11
VPS4B-204ENST00000589604 MARC2Q969Z3 335 aa8.11□□□□□ -1.11
VPS4B-204ENST00000589604 ZFP92A6NM28 416 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 FCGR2BP31994 310 aaPredicted RBP8.1□□□□□ -1.11
VPS4B-204ENST00000589604 RHOGP84095 191 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 FOXL1Q12952 345 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 TIGITQ495A1 244 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 PATE2Q6UY27 113 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 KLHDC1Q8N7A1 406 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 ZNF502Q8TBZ5 544 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 VN1R17PQ8TDU5 208 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 WFDC12Q8WWY7 111 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 RAB24Q969Q5 203 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 KCNIP2Q9NS61 270 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 PKD1L1Q8TDX9 2849 aa8.1□□□□□ -1.11
VPS4B-204ENST00000589604 CTXND1A0A1B0GTU2 59 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 CYB5BO43169 146 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 IGHV3-23P01764 117 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 MFAP4P55083 255 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 SELENOTP62341 195 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 SRSF3P84103 164 aaKnown RBP8.09□□□□□ -1.11
VPS4B-204ENST00000589604 C15orf32Q32M92 178 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 TCTEX1D4Q5JR98 221 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 SPATA31B1PQ5VZV4 182 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 FAM122CQ6P4D5 195 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 IL34Q6ZMJ4 242 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 NECAP1Q8NC96 275 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 SFT2D1Q8WV19 159 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 TMEM37Q8WXS4 190 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 C16orf92Q96LL3 132 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 MS4A10Q96PG2 267 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 KLK15Q9H2R5 256 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 SLC25A22Q9H936 323 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 SEPSECSQ9HD40 501 aaKnown RBP8.09□□□□□ -1.11
VPS4B-204ENST00000589604 C21orf62Q9NYP8 219 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 THYN1Q9P016 225 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 TRRAPQ9Y4A5 3859 aa8.09□□□□□ -1.11
VPS4B-204ENST00000589604 A0A1B0GV50 99 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 RAB19A4D1S5 217 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 ADARB2-AS1A8MUL3 147 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 H3BUA1 57 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 CTSGP08311 255 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 OR5G3P0C626 314 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 ADMP35318 185 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 FGF8P55075 233 aaPredicted RBP8.08□□□□□ -1.12
VPS4B-204ENST00000589604 PLP1P60201 277 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 LCN15Q6UWW0 184 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 ZNF329Q86UD4 541 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 C11orf44Q8N8P7 122 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 TXN2Q99757 166 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 ACTR3CQ9C0K3 210 aaPredicted RBP8.08□□□□□ -1.12
VPS4B-204ENST00000589604 ZNF355PQ9NSJ1 428 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 MAP1LC3B2A6NCE7 125 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 NUDT19A8MXV4 375 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 HMGB3O15347 200 aaKnown RBP8.08□□□□□ -1.12
VPS4B-204ENST00000589604 IGHG4P01861 327 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 PSG1P11464 419 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 NPBWR1P48145 328 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 CDC34P49427 236 aaPredicted RBP8.08□□□□□ -1.12
VPS4B-204ENST00000589604 KIAA0141Q14154 515 aaPredicted RBP8.08□□□□□ -1.12
VPS4B-204ENST00000589604 MORN5Q5VZ52 161 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 LCNL1Q6ZST4 164 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 CHRDL1Q9BU40 450 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 MAP1LC3BQ9GZQ8 125 aa8.08□□□□□ -1.12
VPS4B-204ENST00000589604 FAM223BA6NKX1 122 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 C9JQL5 133 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms