RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TEX46H3BTG2 121 aa19.36■□□□□ 0.69
SHMT1-207ENST00000580002 HMGB3O15347 200 aaKnown RBP19.36■□□□□ 0.69
SHMT1-207ENST00000580002 TGOLN2O43493 480 aa19.36■□□□□ 0.69
SHMT1-207ENST00000580002 KRTAP10-3P60369 221 aa19.36■□□□□ 0.69
SHMT1-207ENST00000580002 OR10G4Q8NGN3 311 aa19.36■□□□□ 0.69
SHMT1-207ENST00000580002 OR10G9Q8NGN4 311 aa19.36■□□□□ 0.69
SHMT1-207ENST00000580002 OR10G7Q8NGN6 311 aa19.36■□□□□ 0.69
SHMT1-207ENST00000580002 RNF141Q8WVD5 230 aa19.36■□□□□ 0.69
SHMT1-207ENST00000580002 PROK1P58294 105 aa19.35■□□□□ 0.69
SHMT1-207ENST00000580002 TMEM41BQ5BJD5 291 aa19.35■□□□□ 0.69
SHMT1-207ENST00000580002 FAM122CQ6P4D5 195 aa19.35■□□□□ 0.69
SHMT1-207ENST00000580002 TRAV30A0A087WSZ9 112 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 A0A1B0GV50 99 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 NUPL2O15504 423 aaKnown RBP19.34■□□□□ 0.69
SHMT1-207ENST00000580002 ORM2P19652 201 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 MORN5Q5VZ52 161 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 OR4F5Q8NH21 305 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 CLPSL1A2RUU4 121 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 OR2C1O95371 312 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 TOMM40O96008 361 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 M6PRP20645 277 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 ARL3P36405 182 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 YPEL3P61236 119 aaPredicted RBP19.34■□□□□ 0.69
SHMT1-207ENST00000580002 Q6ZRG5 221 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 OR51G1Q8NGK1 321 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 UHRF2Q96PU4 802 aa19.34■□□□□ 0.69
SHMT1-207ENST00000580002 SEPSECSQ9HD40 501 aaKnown RBP19.34■□□□□ 0.69
SHMT1-207ENST00000580002 PUS1Q9Y606 427 aaKnown RBP eCLIP19.34■□□□□ 0.69
SHMT1-207ENST00000580002 BMPR1BO00238 502 aa19.33■□□□□ 0.68
SHMT1-207ENST00000580002 LYZP61626 148 aa19.33■□□□□ 0.68
SHMT1-207ENST00000580002 SELENOTP62341 195 aa19.33■□□□□ 0.68
SHMT1-207ENST00000580002 PRIMA1Q86XR5 153 aa19.33■□□□□ 0.68
SHMT1-207ENST00000580002 OR1B1Q8NGR6 318 aa19.33■□□□□ 0.68
SHMT1-207ENST00000580002 RCC1LQ96I51 464 aaKnown RBP19.33■□□□□ 0.68
SHMT1-207ENST00000580002 PBDC1Q9BVG4 233 aa19.33■□□□□ 0.68
SHMT1-207ENST00000580002 SLC25A22Q9H936 323 aa19.33■□□□□ 0.68
SHMT1-207ENST00000580002 UMAD1C9J7I0 102 aa19.32■□□□□ 0.68
SHMT1-207ENST00000580002 ACOT6Q3I5F7 207 aaPredicted RBP19.32■□□□□ 0.68
SHMT1-207ENST00000580002 KHDC1LQ5JSQ8 128 aa19.32■□□□□ 0.68
SHMT1-207ENST00000580002 USF2Q15853 346 aaPredicted RBP19.32■□□□□ 0.68
SHMT1-207ENST00000580002 DEFB136Q30KP8 78 aa19.32■□□□□ 0.68
SHMT1-207ENST00000580002 COMMD1Q8N668 190 aa19.32■□□□□ 0.68
SHMT1-207ENST00000580002 UBE2E2Q96LR5 201 aa19.32■□□□□ 0.68
SHMT1-207ENST00000580002 IL4P05112 153 aa19.31■□□□□ 0.68
SHMT1-207ENST00000580002 OR5G3P0C626 314 aa19.31■□□□□ 0.68
SHMT1-207ENST00000580002 PXDC1Q5TGL8 231 aa19.31■□□□□ 0.68
SHMT1-207ENST00000580002 TOMM20LQ6UXN7 152 aa19.31■□□□□ 0.68
SHMT1-207ENST00000580002 CITED2Q99967 270 aaPredicted RBP19.31■□□□□ 0.68
SHMT1-207ENST00000580002 PEF1Q9UBV8 284 aaKnown RBP19.31■□□□□ 0.68
SHMT1-207ENST00000580002 TRAV5A0A0B4J249 113 aa19.3■□□□□ 0.68
SHMT1-207ENST00000580002 WI2-2373I1.2A0A1W2PRP0 233 aa19.3■□□□□ 0.68
SHMT1-207ENST00000580002 FGF8P55075 233 aaPredicted RBP19.3■□□□□ 0.68
SHMT1-207ENST00000580002 LCN15Q6UWW0 184 aa19.3■□□□□ 0.68
SHMT1-207ENST00000580002 MIR17HGQ75NE6 70 aa19.3■□□□□ 0.68
SHMT1-207ENST00000580002 Q8WTZ3 238 aa19.3■□□□□ 0.68
SHMT1-207ENST00000580002 DUX3Q96PT4 197 aa19.3■□□□□ 0.68
SHMT1-207ENST00000580002 KCNIP2Q9NS61 270 aa19.3■□□□□ 0.68
SHMT1-207ENST00000580002 A0A1W2PRX2 142 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 I3L521 148 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 CCL20P78556 96 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 ATRQ13535 2644 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 CLLU1Q5K131 121 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 RAB24Q969Q5 203 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 DNAJC4Q9NNZ3 241 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 LGALS1P09382 135 aaKnown RBP19.29■□□□□ 0.68
SHMT1-207ENST00000580002 RAB5CP51148 216 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 FAM78BQ5VT40 261 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 UNQ9165/PRO28630Q6UXU0 137 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 HRH4Q9H3N8 390 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 ZFAND3Q9H8U3 227 aa19.29■□□□□ 0.68
SHMT1-207ENST00000580002 IGHV4OR15-8A0A075B7B6 117 aa19.28■□□□□ 0.68
SHMT1-207ENST00000580002 A0A087WW49 117 aa19.28■□□□□ 0.68
SHMT1-207ENST00000580002 ZNF207O43670 478 aaKnown RBP19.28■□□□□ 0.68
SHMT1-207ENST00000580002 COX7A2P2O60397 106 aa19.28■□□□□ 0.68
SHMT1-207ENST00000580002 MBP02144 154 aa19.28■□□□□ 0.68
SHMT1-207ENST00000580002 LEMD1Q68G75 181 aa19.28■□□□□ 0.68
SHMT1-207ENST00000580002 ZNF600Q6ZNG1 722 aa19.28■□□□□ 0.68
SHMT1-207ENST00000580002 RNF125Q96EQ8 232 aa19.28■□□□□ 0.68
SHMT1-207ENST00000580002 GAR1Q9NY12 217 aaKnown RBP19.28■□□□□ 0.68
SHMT1-207ENST00000580002 CDX1P47902 265 aaPredicted RBP19.27■□□□□ 0.68
SHMT1-207ENST00000580002 PLP1P60201 277 aa19.27■□□□□ 0.68
SHMT1-207ENST00000580002 SPSB3Q6PJ21 355 aa19.27■□□□□ 0.68
SHMT1-207ENST00000580002 SFT2D1Q8WV19 159 aa19.27■□□□□ 0.68
SHMT1-207ENST00000580002 MRPL27Q9P0M9 148 aaKnown RBP19.27■□□□□ 0.68
SHMT1-207ENST00000580002 TENM1Q9UKZ4 2725 aa19.27■□□□□ 0.68
SHMT1-207ENST00000580002 HYPMO75409 117 aa19.27■□□□□ 0.67
SHMT1-207ENST00000580002 CDC34P49427 236 aaPredicted RBP19.27■□□□□ 0.67
SHMT1-207ENST00000580002 RAB14P61106 215 aa19.27■□□□□ 0.67
SHMT1-207ENST00000580002 C10orf113Q5VZT2 155 aa19.27■□□□□ 0.67
SHMT1-207ENST00000580002 SAT2Q96F10 170 aaPredicted RBP19.27■□□□□ 0.67
SHMT1-207ENST00000580002 ATP6V0BQ99437 205 aa19.27■□□□□ 0.67
SHMT1-207ENST00000580002 FBN1P35555 2871 aaKnown RBP19.26■□□□□ 0.67
SHMT1-207ENST00000580002 SEC14L6B5MCN3 397 aa19.26■□□□□ 0.67
SHMT1-207ENST00000580002 H2AFB1P0C5Y9 115 aa19.26■□□□□ 0.67
SHMT1-207ENST00000580002 ACTR3CQ9C0K3 210 aaPredicted RBP19.26■□□□□ 0.67
SHMT1-207ENST00000580002 TMPRSS5Q9H3S3 457 aa19.26■□□□□ 0.67
SHMT1-207ENST00000580002 FABP1P07148 127 aa19.25■□□□□ 0.67
SHMT1-207ENST00000580002 KRTAP24-1Q3LI83 254 aa19.25■□□□□ 0.67
SHMT1-207ENST00000580002 C8orf86Q6ZUL3 223 aa19.25■□□□□ 0.67
SHMT1-207ENST00000580002 LINC00305Q7Z4B0 112 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms