RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 RWDD2AQ9UIY3 292 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 DNAJC12Q9UKB3 198 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 TMEM14AQ9Y6G1 99 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 M0R381 172 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 ZNF207O43670 478 aaKnown RBP3.77□□□□□ -1.81
VPS53-219ENST00000576019 LTAP01374 205 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 IFNA1P01562 189 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 IFNA21P01568 189 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 IDO1P14902 403 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 ALDH3A1P30838 453 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 SPINT3P49223 89 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 BTN3A2P78410 334 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 TNFRSF9Q07011 255 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 C3orf33Q6P1S2 294 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 TMEM144Q7Z5S9 345 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 SBSPONQ8IVN8 264 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 SMIM20Q8N5G0 67 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 PYDC1Q8WXC3 89 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 BORCS7Q96B45 105 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 C16orf95Q9H693 158 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 ZNF355PQ9NSJ1 428 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 ZNF492Q9P255 531 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 SMPXQ9UHP9 88 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 ENOPH1Q9UHY7 261 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 UFC1Q9Y3C8 167 aa3.77□□□□□ -1.81
VPS53-219ENST00000576019 A0A096LNJ9 63 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 FUOMA2VDF0 154 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 H3BSA7 217 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 PDE6DO43924 150 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 HIST1H1TP22492 207 aaPredicted RBP3.76□□□□□ -1.81
VPS53-219ENST00000576019 CNTFRP26992 372 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 OPRK1P41145 380 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 SP6Q3SY56 376 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 ZNF101Q8IZC7 436 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 Q8N7P7 452 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.76□□□□□ -1.81
VPS53-219ENST00000576019 OR51A2Q8NGJ7 313 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 LHFPL5Q8TAF8 219 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 CGREF1Q99674 301 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 ALX4Q9H161 411 aaPredicted RBP3.76□□□□□ -1.81
VPS53-219ENST00000576019 FAM96AQ9H5X1 160 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 CXorf21Q9HAI6 301 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 UQCC1Q9NVA1 299 aa3.76□□□□□ -1.81
VPS53-219ENST00000576019 BOKQ9UMX3 212 aaPredicted RBP3.76□□□□□ -1.81
VPS53-219ENST00000576019 DOCK11Q5JSL3 2073 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 VPS13BQ7Z7G8 4022 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 IGHV1-3A0A0C4DH29 117 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 A0A1B0GV50 99 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 FAAHO00519 579 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 HLA-DQB2P05538 268 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 ADRA2AP08913 450 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 C1GALT1C1LP0DN25 315 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 CCL3P10147 92 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 PEBP1P30086 187 aaKnown RBP3.75□□□□□ -1.81
VPS53-219ENST00000576019 GABRA3P34903 492 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 PPP1CCP36873 323 aaKnown RBP3.75□□□□□ -1.81
VPS53-219ENST00000576019 NUDT2P50583 147 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 DAPP51397 102 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 GNG3P63215 75 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 BTN1A1Q13410 526 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 KCNJ8Q15842 424 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 C1orf174Q8IYL3 243 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 CYB561D1Q8N8Q1 229 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 POP5Q969H6 163 aaKnown RBP3.75□□□□□ -1.81
VPS53-219ENST00000576019 SLC25A46Q96AG3 418 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 ABCG5Q9H222 651 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 ANAPC10Q9UM13 185 aa3.75□□□□□ -1.81
VPS53-219ENST00000576019 PKHD1L1Q86WI1 4243 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 EXOC1LA0A1B0GW35 172 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 RBFOX2O43251 390 aaKnown RBP eCLIP3.74□□□□□ -1.81
VPS53-219ENST00000576019 OR2J2O76002 312 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 CRYGDP07320 174 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 PFN1P07737 140 aaKnown RBP3.74□□□□□ -1.81
VPS53-219ENST00000576019 RAB4BP61018 213 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 ZNF79Q15937 498 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 DEFB116Q30KQ4 102 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 TEX36Q5VZQ5 186 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 TIFABQ6ZNK6 161 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 Q6ZTC4 211 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 DAZ4Q86SG3 579 aaKnown RBP3.74□□□□□ -1.81
VPS53-219ENST00000576019 C20orf196Q8IYI0 205 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 APCDD1LQ8NCL9 501 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 PLPP5Q8NEB5 264 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 OR8A1Q8NGG7 326 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 OR52N1Q8NH53 320 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 SHANK2-AS3Q9BTD1 123 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 ZNF331Q9NQX6 463 aaPredicted RBP3.74□□□□□ -1.81
VPS53-219ENST00000576019 DAZ1Q9NQZ3 744 aaKnown RBP3.74□□□□□ -1.81
VPS53-219ENST00000576019 RPS6KB2Q9UBS0 482 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 NDUFAF1Q9Y375 327 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 FIS1Q9Y3D6 152 aa3.74□□□□□ -1.81
VPS53-219ENST00000576019 MDFIC2A0A1B0GVS7 189 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 IZUMO1RA6ND01 250 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 SIGLEC16A6NMB1 481 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 KNCNA6PVL3 124 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 OR7C2O60412 319 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 ATG12O94817 140 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 FSTL3O95633 263 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 IGHMP01871 453 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 OPN1SWP03999 348 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 1079 ms