RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 B3GALNT1O75752 331 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 TBPP20226 339 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 TFPI2P48307 235 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 AKR1C2P52895 323 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 LGALS9CQ6DKI2 356 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 TCF24Q7RTU0 167 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 APRG1Q8IVJ8 170 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 SLC35G3Q8N808 338 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 CCDC71LQ8N9Z2 235 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 C11orf45Q8TAV5 145 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 GPX8Q8TED1 209 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 MRGPRFQ96AM1 343 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 SEC22AQ96IW7 307 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 SLIRPQ9GZT3 109 aaKnown RBP6.79□□□□□ -1.32
CIITA-208ENST00000572665 C11orf68Q9H3H3 251 aaKnown RBP6.79□□□□□ -1.32
CIITA-208ENST00000572665 RSL24D1Q9UHA3 163 aaKnown RBP6.79□□□□□ -1.32
CIITA-208ENST00000572665 IGKV3-7A0A075B6H7 116 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 TRAV30A0A087WSZ9 112 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 IGLV5-52A0A0A0MRZ9 124 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 C11orf94C9JXX5 98 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 INS-IGF2F8WCM5 200 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 GAGE7O76087 117 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 CA1P00915 261 aaPredicted RBP6.78□□□□□ -1.32
CIITA-208ENST00000572665 IFNA17P01571 189 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 GAGE12FP0CL80 117 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 GAGE12GP0CL81 117 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 GAGE12IP0CL82 117 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 PGAM2P15259 253 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 NPPCP23582 126 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 SEC61BP60468 96 aaKnown RBP6.78□□□□□ -1.32
CIITA-208ENST00000572665 RND3P61587 244 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 GAGE1Q13065 139 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 GAGE4Q13068 117 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 TMEM187Q14656 261 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 RNASE10Q5GAN6 216 aaKnown RBP6.78□□□□□ -1.32
CIITA-208ENST00000572665 WDR73Q6P4I2 378 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 STHQ8IWL8 128 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 OR11H2Q8NH07 326 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 RNASE11Q8TAA1 199 aaKnown RBP6.78□□□□□ -1.32
CIITA-208ENST00000572665 ZFAND1Q8TCF1 268 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 METTL26Q96S19 204 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 HRH4Q9H3N8 390 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 COMMD3Q9UBI1 195 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 CACFD1Q9UGQ2 172 aa6.78□□□□□ -1.32
CIITA-208ENST00000572665 IGHV3-49A0A0A0MS15 119 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 HPGDSO60760 199 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 ELK1P19419 428 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 HOXA1P49639 335 aaPredicted RBP6.77□□□□□ -1.33
CIITA-208ENST00000572665 PIGPP57054 158 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 TRIM16LQ309B1 348 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 MORN3Q6PF18 240 aaPredicted RBP6.77□□□□□ -1.33
CIITA-208ENST00000572665 TOMM20LQ6UXN7 152 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 SNX29P2Q8IUI4 249 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 GBGT1Q8N5D6 347 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 ARRDC1Q8N5I2 433 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 MS4A6AQ9H2W1 248 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 VSIRQ9H7M9 311 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 NDUFA13Q9P0J0 144 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 COPZ2Q9P299 210 aa6.77□□□□□ -1.33
CIITA-208ENST00000572665 PUS1Q9Y606 427 aaKnown RBP eCLIP6.77□□□□□ -1.33
CIITA-208ENST00000572665 CCDC160A6NGH7 325 aa6.76□□□□□ -1.33
CIITA-208ENST00000572665 FAM25AB3EWG3 89 aa6.76□□□□□ -1.33
CIITA-208ENST00000572665 FAM25CB3EWG5 89 aa6.76□□□□□ -1.33
CIITA-208ENST00000572665 FAM25GB3EWG6 89 aa6.76□□□□□ -1.33
CIITA-208ENST00000572665 PRSS2P07478 247 aa6.76□□□□□ -1.33
CIITA-208ENST00000572665 SPP1P10451 314 aa6.76□□□□□ -1.33
CIITA-208ENST00000572665 OPRK1P41145 380 aa6.76□□□□□ -1.33
CIITA-208ENST00000572665 AP2S1P53680 142 aaPredicted RBP6.76□□□□□ -1.33
CIITA-208ENST00000572665 FAM219AQ8IW50 185 aa6.76□□□□□ -1.33
CIITA-208ENST00000572665 TMEM230Q96A57 120 aa6.76□□□□□ -1.33
CIITA-208ENST00000572665 MIXL1Q9H2W2 232 aa6.76□□□□□ -1.33
CIITA-208ENST00000572665 RABAC1Q9UI14 185 aa6.76□□□□□ -1.33
CIITA-208ENST00000572665 DNAH1Q9P2D7 4330 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 IGHV3OR16-13A0A075B7E8 117 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 IGHV3-74A0A0B4J1X5 117 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 C3orf85A0A1B0GTC6 90 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 HELTA6NFD8 242 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 CLN5O75503 358 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 TMEM50AO95807 157 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 IGKV1-39P01597 117 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 IGKV1D-39P04432 117 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 TAS2R19P59542 299 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 DEFB131AP59861 70 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 EWSR1Q01844 656 aaKnown RBP eCLIP6.75□□□□□ -1.33
CIITA-208ENST00000572665 OR4X1Q8NH49 305 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 ZNF414Q96IQ9 312 aa6.75□□□□□ -1.33
CIITA-208ENST00000572665 C14orf166Q9Y224 244 aaKnown RBP6.75□□□□□ -1.33
CIITA-208ENST00000572665 SACSQ9NZJ4 4579 aa6.74□□□□□ -1.33
CIITA-208ENST00000572665 RGS5O15539 181 aa6.74□□□□□ -1.33
CIITA-208ENST00000572665 IGHV3-48P01763 117 aa6.74□□□□□ -1.33
CIITA-208ENST00000572665 SLC25A4P12235 298 aa6.74□□□□□ -1.33
CIITA-208ENST00000572665 MIFP14174 115 aa6.74□□□□□ -1.33
CIITA-208ENST00000572665 CRYBB3P26998 211 aa6.74□□□□□ -1.33
CIITA-208ENST00000572665 HTR2BP41595 481 aa6.74□□□□□ -1.33
CIITA-208ENST00000572665 NANOS2P60321 138 aaKnown RBP6.74□□□□□ -1.33
CIITA-208ENST00000572665 NUTF2P61970 127 aaKnown RBP6.74□□□□□ -1.33
CIITA-208ENST00000572665 SSBP1Q04837 148 aaKnown RBP6.74□□□□□ -1.33
CIITA-208ENST00000572665 LEMD1Q68G75 181 aa6.74□□□□□ -1.33
CIITA-208ENST00000572665 ETFRF1Q6IPR1 90 aa6.74□□□□□ -1.33
CIITA-208ENST00000572665 STXBP6Q8NFX7 210 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms