RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 IL7P13232 177 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 OR10J1P30954 320 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 C4orf46Q504U0 113 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 PRSS54Q6PEW0 395 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 ST8SIA2Q92186 375 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 CIB3Q96Q77 187 aaPredicted RBP6.04□□□□□ -1.44
VPS53-214ENST00000572607 FAM110AQ9BQ89 295 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 RETNQ9HD89 108 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 MRPL36Q9P0J6 103 aaKnown RBP6.04□□□□□ -1.44
VPS53-214ENST00000572607 PFDN2Q9UHV9 154 aa6.04□□□□□ -1.44
VPS53-214ENST00000572607 IGHV3-66A0A0C4DH42 116 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 C9orf170A2RU37 121 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 HELTA6NFD8 242 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 ZFP92A6NM28 416 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 WRBO00258 174 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 UBE2CO00762 179 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 HNRNPCP07910 306 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS53-214ENST00000572607 OR4E1P0C645 316 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 IAPPP10997 89 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 LYL1P12980 280 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 GPX4P36969 197 aaPredicted RBP6.03□□□□□ -1.44
VPS53-214ENST00000572607 NUP62P37198 522 aaPredicted RBP6.03□□□□□ -1.44
VPS53-214ENST00000572607 YPEL3P61236 119 aaPredicted RBP6.03□□□□□ -1.44
VPS53-214ENST00000572607 ODF3L2Q3SX64 289 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 GGNBP1Q5YKI7 109 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 GBGT1Q8N5D6 347 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 STPG3Q8N7X2 389 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 IL17DQ8TAD2 202 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 NPIPB3Q92617 1050 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 VSIRQ9H7M9 311 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 EDA2RQ9HAV5 297 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 RABAC1Q9UI14 185 aa6.03□□□□□ -1.44
VPS53-214ENST00000572607 TRAV2A0A0B4J234 112 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 KIR2DL5BA0A0G2JN68 375 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 KIR2DL5BA0A0G2JPC4 375 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 SYNGR2O43760 224 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 PITX3O75364 302 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 DFFBO76075 338 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 TOMM40O96008 361 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 IGKV1-17P01599 117 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 APOHP02749 345 aaPredicted RBP6.02□□□□□ -1.45
VPS53-214ENST00000572607 IL4P05112 153 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 RD3LP0DJH9 198 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 RPL35AP18077 110 aaKnown RBP6.02□□□□□ -1.45
VPS53-214ENST00000572607 CRYBB3P26998 211 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 P2RY1P47900 373 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 AP2S1P53680 142 aaPredicted RBP6.02□□□□□ -1.45
VPS53-214ENST00000572607 DHRS2Q13268 280 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 FAM90A2PQ658T7 463 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 LYG2Q86SG7 212 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 KIR2DL5AQ8N109 375 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 STXBP6Q8NFX7 210 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 KIR2DL5BQ8NHK3 375 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 ZNF414Q96IQ9 312 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 MS4A6AQ9H2W1 248 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 FRAS1Q86XX4 4008 aa6.02□□□□□ -1.45
VPS53-214ENST00000572607 HERC2O95714 4834 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 ALMS1Q8TCU4 4167 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 LYRM1O43325 122 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 ADAP1O75689 374 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 ANXA7P20073 488 aaKnown RBP6.01□□□□□ -1.45
VPS53-214ENST00000572607 SPANXN5Q5MJ07 72 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 LINC00299Q6ZSB3 139 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 Q6ZWC4 215 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 APRG1Q8IVJ8 170 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 OR51G1Q8NGK1 321 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 TMEM170AQ8WVE7 144 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 S100ZQ8WXG8 99 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 SDHCQ99643 169 aaPredicted RBP6.01□□□□□ -1.45
VPS53-214ENST00000572607 CCDC32Q9BV29 185 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 PBDC1Q9BVG4 233 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 MAGT1Q9H0U3 335 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 C20orf85Q9H1P6 137 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 MAP6D1Q9H9H5 199 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 FLVCR2Q9UPI3 526 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 TP53TG1Q9Y2A0 90 aa6.01□□□□□ -1.45
VPS53-214ENST00000572607 STRAPQ9Y3F4 350 aaKnown RBP6.01□□□□□ -1.45
VPS53-214ENST00000572607 MPTX1A8MV57 137 aa6□□□□□ -1.45
VPS53-214ENST00000572607 SPRY2O43597 315 aa6□□□□□ -1.45
VPS53-214ENST00000572607 SCGB1D2O95969 90 aa6□□□□□ -1.45
VPS53-214ENST00000572607 CFDP00746 253 aaPredicted RBP6□□□□□ -1.45
VPS53-214ENST00000572607 PSG1P11464 419 aa6□□□□□ -1.45
VPS53-214ENST00000572607 S100A7P31151 101 aa6□□□□□ -1.45
VPS53-214ENST00000572607 BTCP35070 178 aa6□□□□□ -1.45
VPS53-214ENST00000572607 NKX2-1P43699 371 aaPredicted RBP6□□□□□ -1.45
VPS53-214ENST00000572607 DEFB131AP59861 70 aa6□□□□□ -1.45
VPS53-214ENST00000572607 AKR1C1Q04828 323 aa6□□□□□ -1.45
VPS53-214ENST00000572607 GAMTQ14353 236 aa6□□□□□ -1.45
VPS53-214ENST00000572607 ZNF846Q147U1 533 aa6□□□□□ -1.45
VPS53-214ENST00000572607 USF2Q15853 346 aaPredicted RBP6□□□□□ -1.45
VPS53-214ENST00000572607 DEFB135Q30KP9 77 aa6□□□□□ -1.45
VPS53-214ENST00000572607 CASC10Q5T4H9 136 aa6□□□□□ -1.45
VPS53-214ENST00000572607 ZFAND6Q6FIF0 208 aa6□□□□□ -1.45
VPS53-214ENST00000572607 OR8G2PQ6IF36 304 aa6□□□□□ -1.45
VPS53-214ENST00000572607 MZT2BQ6NZ67 158 aa6□□□□□ -1.45
VPS53-214ENST00000572607 LILRB2Q8N423 598 aa6□□□□□ -1.45
VPS53-214ENST00000572607 PPP1R14BQ96C90 147 aa6□□□□□ -1.45
VPS53-214ENST00000572607 RNF125Q96EQ8 232 aa6□□□□□ -1.45
VPS53-214ENST00000572607 PSENENQ9NZ42 101 aa6□□□□□ -1.45
VPS53-214ENST00000572607 SMCO3A2RU48 225 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms