RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 A0A1B0GUT8 65 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 SYS1-DBNDD2H3BUS1 97 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 IGKV1-16P04430 117 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 COL8A2P25067 703 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 TWIST1Q15672 202 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 TMEM97Q5BJF2 176 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 ZNF714Q96N38 554 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 CST9LQ9H4G1 147 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 LY96Q9Y6Y9 160 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 TRAV30A0A087WSZ9 112 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 IGHV2OR16-5A0A0B4J2B6 119 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 DKK1O94907 266 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 VDAC2P45880 294 aaPredicted RBP9.35□□□□□ -0.91
CLN3-238ENST00000569430 OR4C13Q8NGP0 309 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 COL25A1Q9BXS0 654 aaPredicted RBP9.35□□□□□ -0.91
CLN3-238ENST00000569430 UFC1Q9Y3C8 167 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 TMEM265A0A087WTH1 108 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 PRCDQ00LT1 54 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 TMUB1Q9BVT8 246 aa9.35□□□□□ -0.91
CLN3-238ENST00000569430 IGHV3-35A0A0C4DH35 117 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 NCBP2LA6PVI3 153 aaKnown RBP9.34□□□□□ -0.91
CLN3-238ENST00000569430 ZNF785A8K8V0 405 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 PMS2P5A8MQ11 134 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 GNG7O60262 68 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 SPCS1Q9Y6A9 102 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 MGAQ8IWI9 3026 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 FCGR2BP31994 310 aaPredicted RBP9.34□□□□□ -0.91
CLN3-238ENST00000569430 ERVK11-1P61568 191 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 ATMQ13315 3056 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 C1orf210Q8IVY1 113 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 Q9H3A6 140 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 MRPL27Q9P0M9 148 aaKnown RBP9.34□□□□□ -0.91
CLN3-238ENST00000569430 SPRR3Q9UBC9 169 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 TMEM189A5PLL7 270 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 OCIAD2Q56VL3 154 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 CACNG8Q8WXS5 425 aa9.34□□□□□ -0.91
CLN3-238ENST00000569430 PIEZO2Q9H5I5 2752 aa9.34□□□□□ -0.92
CLN3-238ENST00000569430 Q5PR19 223 aa9.33□□□□□ -0.92
CLN3-238ENST00000569430 MBNL2Q5VZF2 373 aaKnown RBP9.33□□□□□ -0.92
CLN3-238ENST00000569430 UBALD2Q8IYN6 164 aa9.33□□□□□ -0.92
CLN3-238ENST00000569430 CIARTQ8N365 385 aaPredicted RBP9.33□□□□□ -0.92
CLN3-238ENST00000569430 ZNF414Q96IQ9 312 aa9.33□□□□□ -0.92
CLN3-238ENST00000569430 J3KRW8 73 aa9.33□□□□□ -0.92
CLN3-238ENST00000569430 ZNF134P52741 427 aa9.33□□□□□ -0.92
CLN3-238ENST00000569430 RPL11P62913 178 aaKnown RBP9.33□□□□□ -0.92
CLN3-238ENST00000569430 IGKV1D-17A0A075B6S4 117 aa9.33□□□□□ -0.92
CLN3-238ENST00000569430 CLEC3BP05452 202 aa9.33□□□□□ -0.92
CLN3-238ENST00000569430 Q6ZR03 302 aa9.33□□□□□ -0.92
CLN3-238ENST00000569430 CACNG7P62955 275 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 HIST1H1AQ02539 215 aaPredicted RBP9.32□□□□□ -0.92
CLN3-238ENST00000569430 EBLN2Q6P2I7 272 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 TMEM108Q6UXF1 575 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 OR2K2Q8NGT1 345 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 ZC2HC1AQ96GY0 325 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 SCNM1Q9BWG6 230 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 FOXA2Q9Y261 457 aaPredicted RBP9.32□□□□□ -0.92
CLN3-238ENST00000569430 C9orf172C9J069 976 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 PSG9Q00887 426 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 C9orf106Q8NAJ2 232 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 C5orf30Q96GV9 206 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 ONECUT1Q9UBC0 465 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 LY6G6EA0A0G2JKS1 128 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 ITGB1BP1O14713 200 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 VWC2Q2TAL6 325 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 OSR1Q8TAX0 266 aaPredicted RBP9.32□□□□□ -0.92
CLN3-238ENST00000569430 PRELID3AQ96N28 172 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 U3KQA8 63 aa9.32□□□□□ -0.92
CLN3-238ENST00000569430 PPIAL4EA0A075B759 164 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 IGHV3OR16-8A0A075B7F1 116 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 FAM90A9PA6NNJ1 464 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 PRR33A8MZF0 331 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 SRRM5B3KS81 715 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 PPIAL4FP0DN26 164 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 PET117Q6UWS5 81 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 EXOC3-AS1Q8N2X6 119 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 TP73-AS1Q9UF72 201 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 TP53TG3Q9ULZ0 132 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 TRAV8-6A0A0B4J262 113 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 TRGV8A0A0C4DH27 118 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 GUSBP1Q15486 140 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 IGHV2-26A0A0B4J1V2 119 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 TCRBV4S1A1TA0A5B7 111 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 CGB1A6NKQ9 187 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 AHRRA9YTQ3 701 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 NTN3O00634 580 aaPredicted RBP9.31□□□□□ -0.92
CLN3-238ENST00000569430 C11orf52Q96A22 123 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 LRP4O75096 1905 aa9.31□□□□□ -0.92
CLN3-238ENST00000569430 ZFHX2Q9C0A1 2572 aaPredicted RBP9.31□□□□□ -0.92
CLN3-238ENST00000569430 KIR2DL2P43627 348 aaPredicted RBP9.3□□□□□ -0.92
CLN3-238ENST00000569430 LINC00173Q6ZV60 143 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 PRR7Q8TB68 274 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 KLK15Q9H2R5 256 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 NGBQ9NPG2 151 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 RNF114Q9Y508 228 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 PRRG2O14669 202 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 S100A4P26447 101 aaKnown RBP9.3□□□□□ -0.92
CLN3-238ENST00000569430 ATP5IP56385 69 aaPredicted RBP9.3□□□□□ -0.92
CLN3-238ENST00000569430 RNFT1Q5M7Z0 435 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 SCGB1D4Q6XE38 83 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms