RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PSG1P11464 419 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 S100A7P31151 101 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 CMC4P56277 68 aaPredicted RBP9.74□□□□□ -0.85
CLK3-224ENST00000568605 RPL11P62913 178 aaKnown RBP9.74□□□□□ -0.85
CLK3-224ENST00000568605 OR8G2PQ6IF36 304 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 THAP8Q8NA92 274 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 OR10P1Q8NGE3 313 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 TRGV9Q99603 122 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 ZMAT4Q9H898 229 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 SRD5A3Q9H8P0 318 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 C19orf73Q9NVV2 129 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 HELTA6NFD8 242 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 FNDC10F2Z333 226 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 K7EPK0 472 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 GOSR2O14653 212 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 SSNA1O43805 119 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 METTL15P1P0C7V9 234 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 P2RY1P47900 373 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 BCAP31P51572 246 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 DLK1P80370 383 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 TMEM14EPQ6UXP3 125 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 ASCL2Q99929 193 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 FAM110AQ9BQ89 295 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 PBDC1Q9BVG4 233 aa9.73□□□□□ -0.85
CLK3-224ENST00000568605 IGKV3-7A0A075B6H7 116 aa9.72□□□□□ -0.85
CLK3-224ENST00000568605 TRAV2A0A0B4J234 112 aa9.72□□□□□ -0.85
CLK3-224ENST00000568605 IGHV3-66A0A0C4DH42 116 aa9.72□□□□□ -0.85
CLK3-224ENST00000568605 C7orf66A4D0T2 115 aa9.72□□□□□ -0.85
CLK3-224ENST00000568605 DNASE2O00115 360 aaPredicted RBP9.72□□□□□ -0.85
CLK3-224ENST00000568605 CAV2P51636 162 aa9.72□□□□□ -0.85
CLK3-224ENST00000568605 AP2S1P53680 142 aaPredicted RBP9.72□□□□□ -0.85
CLK3-224ENST00000568605 LYZP61626 148 aa9.72□□□□□ -0.85
CLK3-224ENST00000568605 CYCSP99999 105 aaKnown RBP9.72□□□□□ -0.85
CLK3-224ENST00000568605 USF2Q15853 346 aaPredicted RBP9.72□□□□□ -0.85
CLK3-224ENST00000568605 STX12Q86Y82 276 aa9.72□□□□□ -0.85
CLK3-224ENST00000568605 DEFB125Q8N687 156 aa9.72□□□□□ -0.85
CLK3-224ENST00000568605 BPIFCQ8NFQ6 507 aa9.72□□□□□ -0.85
CLK3-224ENST00000568605 U3KQK5 164 aa9.72□□□□□ -0.85
CLK3-224ENST00000568605 IGKV1D-37A0A075B6S9 117 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 DFFBO76075 338 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 APOHP02749 345 aaPredicted RBP9.71□□□□□ -0.86
CLK3-224ENST00000568605 TFPI2P48307 235 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 PAX9P55771 341 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 RRAS2P62070 204 aaPredicted RBP9.71□□□□□ -0.86
CLK3-224ENST00000568605 ZNF90Q03938 601 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 RAB32Q13637 225 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 FAM90A2PQ658T7 463 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 TMEM144Q7Z5S9 345 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 SBSPONQ8IVN8 264 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 STXBP6Q8NFX7 210 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 PPP1R14BQ96C90 147 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 SPATA25Q9BR10 227 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 GGACTQ9BVM4 153 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 NMES1Q9C002 83 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 WFDC10AQ9H1F0 79 aa9.71□□□□□ -0.86
CLK3-224ENST00000568605 PMS2P5A8MQ11 134 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 RLN2P04090 185 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 PET100P0DJ07 73 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 SELENOTP62341 195 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 HBG1P69891 147 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 HBG2P69892 147 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 OR2F1Q13607 317 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 ODF3L2Q3SX64 289 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 TEPPQ6URK8 271 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 S100A7AQ86SG5 101 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 GBGT1Q8N5D6 347 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 MS4A6AQ9H2W1 248 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 NPVFQ9HCQ7 196 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 LYRM2Q9NU23 88 aaPredicted RBP9.7□□□□□ -0.86
CLK3-224ENST00000568605 FBXL17Q9UF56 701 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 UBQLN2Q9UHD9 624 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 SLC45A2Q9UMX9 530 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 U3KQE9 123 aa9.7□□□□□ -0.86
CLK3-224ENST00000568605 IGKV1OR2-108A0A075B7D4 117 aa9.69□□□□□ -0.86
CLK3-224ENST00000568605 LOC102724200A0A096LPH7 203 aaPredicted RBP9.69□□□□□ -0.86
CLK3-224ENST00000568605 SLC38A11Q08AI6 406 aa9.69□□□□□ -0.86
CLK3-224ENST00000568605 C16orf54Q6UWD8 224 aa9.69□□□□□ -0.86
CLK3-224ENST00000568605 SIGLEC15Q6ZMC9 328 aa9.69□□□□□ -0.86
CLK3-224ENST00000568605 LILRB2Q8N423 598 aa9.69□□□□□ -0.86
CLK3-224ENST00000568605 GLMPQ8WWB7 406 aa9.69□□□□□ -0.86
CLK3-224ENST00000568605 TM2D3Q9BRN9 247 aa9.69□□□□□ -0.86
CLK3-224ENST00000568605 GGTLC1Q9BX51 225 aa9.69□□□□□ -0.86
CLK3-224ENST00000568605 BUB3O43684 328 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 DEDDO75618 318 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 CCNKO75909 580 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 SULT1A1P50225 295 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 APOC4P55056 127 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 IL15RAQ13261 267 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 HAGHQ16775 308 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 CYP2G1PQ6ZSU1 146 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 ZNF546Q86UE3 836 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 WFDC3Q8IUB2 231 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 RCHY1Q96PM5 261 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 TMEM147Q9BVK8 224 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 MAP6D1Q9H9H5 199 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 RNF24Q9Y225 148 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 AGRNO00468 2067 aa9.68□□□□□ -0.86
CLK3-224ENST00000568605 E5RGE8 158 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 CST7O76096 145 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 SIX6O95475 246 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms