RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, human

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-222	ENST00000566083	USF2	Q15853	346 aa	Predicted RBP	10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	OR8G2P	Q6IF36	304 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	SIGLEC15	Q6ZMC9	328 aa		10.84	□□□□□ -0.67
CLN3-222	ENST00000566083	TRAV10	A0A0B4J240	114 aa		10.83	□□□□□ -0.68
CLN3-222	ENST00000566083	IGHV4-28	A0A0C4DH34	117 aa		10.83	□□□□□ -0.68
CLN3-222	ENST00000566083	FABP12	A6NFH5	140 aa		10.83	□□□□□ -0.68
CLN3-222	ENST00000566083	AKR1C4	P17516	323 aa		10.83	□□□□□ -0.68
CLN3-222	ENST00000566083	RPP25L	Q8N5L8	163 aa	Known RBP	10.83	□□□□□ -0.68
CLN3-222	ENST00000566083	TMEM170A	Q8WVE7	144 aa		10.83	□□□□□ -0.68
CLN3-222	ENST00000566083	DEDD2	Q8WXF8	326 aa		10.83	□□□□□ -0.68
CLN3-222	ENST00000566083	IGLL5	B9A064	214 aa		10.82	□□□□□ -0.68
CLN3-222	ENST00000566083	FAM90A26	D6RGX4	464 aa		10.82	□□□□□ -0.68
CLN3-222	ENST00000566083	PSG1	P11464	419 aa		10.82	□□□□□ -0.68
CLN3-222	ENST00000566083	ID1	P41134	155 aa		10.82	□□□□□ -0.68
CLN3-222	ENST00000566083	NKX2-1	P43699	371 aa	Predicted RBP	10.82	□□□□□ -0.68
CLN3-222	ENST00000566083	SAMD13	Q5VXD3	122 aa		10.82	□□□□□ -0.68
CLN3-222	ENST00000566083	CSNK1G2-AS1	Q8NCQ2	148 aa		10.82	□□□□□ -0.68
CLN3-222	ENST00000566083	OR1S1	Q8NH92	325 aa		10.82	□□□□□ -0.68
CLN3-222	ENST00000566083	RNF125	Q96EQ8	232 aa		10.82	□□□□□ -0.68
CLN3-222	ENST00000566083	SLC35E1	Q96K37	410 aa		10.82	□□□□□ -0.68
CLN3-222	ENST00000566083	ZFP92	A6NM28	416 aa		10.81	□□□□□ -0.68
CLN3-222	ENST00000566083	RBMY1A1	P0DJD3	496 aa	Known RBP	10.81	□□□□□ -0.68
CLN3-222	ENST00000566083	RBMY1C	P0DJD4	496 aa		10.81	□□□□□ -0.68
CLN3-222	ENST00000566083	C4BPB	P20851	252 aa		10.81	□□□□□ -0.68
CLN3-222	ENST00000566083	HLA-DMB	P28068	263 aa		10.81	□□□□□ -0.68
CLN3-222	ENST00000566083	RAB11A	P62491	216 aa		10.81	□□□□□ -0.68
CLN3-222	ENST00000566083	RBMY1F	Q15415	496 aa	Known RBP	10.81	□□□□□ -0.68
CLN3-222	ENST00000566083	TMEM128	Q5BJH2	165 aa		10.81	□□□□□ -0.68
CLN3-222	ENST00000566083	C1orf194	Q5T5A4	169 aa		10.81	□□□□□ -0.68
CLN3-222	ENST00000566083	LYZL2	Q7Z4W2	148 aa		10.81	□□□□□ -0.68
CLN3-222	ENST00000566083	RBKS	Q9H477	322 aa		10.81	□□□□□ -0.68
CLN3-222	ENST00000566083		X6R8D5	127 aa		10.81	□□□□□ -0.68
CLN3-222	ENST00000566083	SNRPGP15	A8MWD9	76 aa		10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	MED6	O75586	246 aa		10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	DEDD	O75618	318 aa		10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	NXPH3	O95157	252 aa		10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	CFD	P00746	253 aa	Predicted RBP	10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	SLC25A6	P12236	298 aa		10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	S100A7	P31151	101 aa		10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	TNFSF8	P32971	234 aa		10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	SUPT4H1	P63272	117 aa	Known RBP	10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	RPP30	P78346	268 aa	Known RBP	10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	SPATA31B1P	Q5VZV4	182 aa		10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	CIB3	Q96Q77	187 aa	Predicted RBP	10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	SOST	Q9BQB4	213 aa		10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	SLIRP	Q9GZT3	109 aa	Known RBP	10.8	□□□□□ -0.68
CLN3-222	ENST00000566083	APLN	Q9ULZ1	77 aa		10.8	□□□□□ -0.68
CLN3-222	ENST00000566083		A6NHS1	94 aa		10.79	□□□□□ -0.68
CLN3-222	ENST00000566083		H3BMM0	161 aa		10.79	□□□□□ -0.68
CLN3-222	ENST00000566083	HLA-DRB4	P13762	266 aa		10.79	□□□□□ -0.68
CLN3-222	ENST00000566083	GAMT	Q14353	236 aa		10.79	□□□□□ -0.68
CLN3-222	ENST00000566083	MCFD2	Q8NI22	146 aa		10.79	□□□□□ -0.68
CLN3-222	ENST00000566083	SLC25A21	Q9BQT8	299 aa	Predicted RBP	10.79	□□□□□ -0.68
CLN3-222	ENST00000566083	RNF126	Q9BV68	326 aa		10.79	□□□□□ -0.68
CLN3-222	ENST00000566083	PBDC1	Q9BVG4	233 aa		10.79	□□□□□ -0.68
CLN3-222	ENST00000566083	KRTAP17-1	Q9BYP8	105 aa		10.79	□□□□□ -0.68
CLN3-222	ENST00000566083	HLA-DRB4	X5D2U9	266 aa		10.79	□□□□□ -0.68
CLN3-222	ENST00000566083	TMEM189	A5PLL7	270 aa		10.78	□□□□□ -0.68
CLN3-222	ENST00000566083	SMIM9	A6NGZ8	99 aa		10.78	□□□□□ -0.68
CLN3-222	ENST00000566083	TOMM5	Q8N4H5	51 aa		10.78	□□□□□ -0.68
CLN3-222	ENST00000566083	LRTM2	Q8N967	370 aa		10.78	□□□□□ -0.68
CLN3-222	ENST00000566083	CLUHP3	Q96NS8	147 aa		10.78	□□□□□ -0.68
CLN3-222	ENST00000566083	NEU1	Q99519	415 aa		10.78	□□□□□ -0.68
CLN3-222	ENST00000566083	BATF3	Q9NR55	127 aa		10.78	□□□□□ -0.68
CLN3-222	ENST00000566083	CLEC5A	Q9NY25	188 aa		10.78	□□□□□ -0.68
CLN3-222	ENST00000566083	KMT2A	Q03164	3969 aa		10.77	□□□□□ -0.68
CLN3-222	ENST00000566083	PSMB3	P49720	205 aa		10.77	□□□□□ -0.68
CLN3-222	ENST00000566083	GGNBP1	Q5YKI7	109 aa		10.77	□□□□□ -0.68
CLN3-222	ENST00000566083	FOXI2	Q6ZQN5	318 aa		10.77	□□□□□ -0.68
CLN3-222	ENST00000566083	TRGV9	Q99603	122 aa		10.77	□□□□□ -0.68
CLN3-222	ENST00000566083	PRR13	Q9NZ81	148 aa		10.77	□□□□□ -0.68
CLN3-222	ENST00000566083	XCL2	Q9UBD3	114 aa		10.77	□□□□□ -0.68
CLN3-222	ENST00000566083	TMED3	Q9Y3Q3	217 aa		10.77	□□□□□ -0.68
CLN3-222	ENST00000566083	ELOA3C	A0A087WX78	387 aa	Predicted RBP	10.76	□□□□□ -0.69
CLN3-222	ENST00000566083	TEX48	A0A1B0GUV7	120 aa		10.76	□□□□□ -0.69
CLN3-222	ENST00000566083		H3BMQ9	156 aa		10.76	□□□□□ -0.69
CLN3-222	ENST00000566083	PITX3	O75364	302 aa		10.76	□□□□□ -0.69
CLN3-222	ENST00000566083	S100A5	P33763	92 aa		10.76	□□□□□ -0.69
CLN3-222	ENST00000566083	MEOX2	P50222	304 aa		10.76	□□□□□ -0.69
CLN3-222	ENST00000566083		Q6ZTC4	211 aa		10.76	□□□□□ -0.69
CLN3-222	ENST00000566083	TMED4	Q7Z7H5	227 aa		10.76	□□□□□ -0.69
CLN3-222	ENST00000566083	COQ8A	Q8NI60	647 aa		10.76	□□□□□ -0.69
CLN3-222	ENST00000566083	PPP1R14B	Q96C90	147 aa		10.76	□□□□□ -0.69
CLN3-222	ENST00000566083	SLC45A2	Q9UMX9	530 aa		10.76	□□□□□ -0.69
CLN3-222	ENST00000566083	FRAS1	Q86XX4	4008 aa		10.76	□□□□□ -0.69
CLN3-222	ENST00000566083	IGHV4-4	A0A075B6R2	117 aa		10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	ISLR	O14498	428 aa		10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	LYZ	P61626	148 aa		10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	PYDC2	Q56P42	97 aa		10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	ZNF705A	Q6ZN79	300 aa	Predicted RBP	10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	OR8I2	Q8N0Y5	310 aa		10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	RBM38	Q9H0Z9	239 aa	Known RBP	10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	SAV1	Q9H4B6	383 aa	Predicted RBP	10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	IGKV1D-37	A0A075B6S9	117 aa		10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	DEFB131B	A0A096LNP1	70 aa		10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	AMBP	P02760	352 aa		10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	SPART-AS1	P0CW21	52 aa		10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	VAMP1	P23763	118 aa		10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	ZNF90	Q03938	601 aa		10.75	□□□□□ -0.69
CLN3-222	ENST00000566083	EBLN2	Q6P2I7	272 aa		10.75	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms