RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 DFFBO76075 338 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 RRAS2P62070 204 aaPredicted RBP6.86□□□□□ -1.31
VPS35-206ENST00000565228 GUCA2BQ16661 112 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 Q5BKY6 102 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 OR8G2PQ6IF36 304 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 LCN12Q6JVE5 192 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 OR11H7Q8NGC8 314 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 OR51G1Q8NGK1 321 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 OR2K2Q8NGT1 345 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 NEURL2Q9BR09 285 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 PALMDQ9NP74 551 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 CACFD1Q9UGQ2 172 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 UBQLN2Q9UHD9 624 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 STRAPQ9Y3F4 350 aaKnown RBP6.86□□□□□ -1.31
VPS35-206ENST00000565228 STARD9Q9P2P6 4700 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 IGKV3-7A0A075B6H7 116 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 TSPAN4O14817 238 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 PRAF2O60831 178 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 TSC22D2O75157 780 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 PTTG1O95997 202 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 IL4P05112 153 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 ATP5IP56385 69 aaPredicted RBP6.85□□□□□ -1.31
VPS35-206ENST00000565228 TAS2R30P59541 319 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 DEFA1P59665 94 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 DEFA3P59666 94 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 CD81P60033 236 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 OXA1LQ15070 435 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 FCN2Q15485 313 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 GBGT1Q8N5D6 347 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 TMEM252Q8N6L7 170 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 GLMPQ8WWB7 406 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 MARC2Q969Z3 335 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 CIB3Q96Q77 187 aaPredicted RBP6.85□□□□□ -1.31
VPS35-206ENST00000565228 RAB40CQ96S21 281 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 TRGV9Q99603 122 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 B9D2Q9BPU9 175 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 GAR1Q9NY12 217 aaKnown RBP6.85□□□□□ -1.31
VPS35-206ENST00000565228 SMAD5-AS1Q9Y6J3 95 aa6.85□□□□□ -1.31
VPS35-206ENST00000565228 LYSTQ99698 3801 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 TRAV30A0A087WSZ9 112 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 PIGBOS1A0A0B4J2F0 54 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 A8MZ25 164 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 G3V3Q6 166 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 BUB3O43684 328 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 DEDDO75618 318 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 CST7O76096 145 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 RD3LP0DJH9 198 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 TFPI2P48307 235 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 S100A10P60903 97 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 RAB11AP62491 216 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 DLK1P80370 383 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 NHLH2Q02577 135 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 ETFRF1Q6IPR1 90 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 C16orf54Q6UWD8 224 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 PATE2Q6UY27 113 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 TCF24Q7RTU0 167 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 TMEM144Q7Z5S9 345 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 RNF125Q96EQ8 232 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 SLC35E1Q96K37 410 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 MGST2Q99735 147 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 KRTAP17-1Q9BYP8 105 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 NMES1Q9C002 83 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 RETNQ9HD89 108 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 MGAT4CQ9UBM8 478 aa6.84□□□□□ -1.31
VPS35-206ENST00000565228 CSMD3Q7Z407 3707 aa6.84□□□□□ -1.32
VPS35-206ENST00000565228 STAB2Q8WWQ8 2551 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 TRAV25A0A0B4J276 109 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 ZFP92A6NM28 416 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 LINC00869P0C866 280 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 P2RY1P47900 373 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 DEFB1P60022 68 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 SLC38A11Q08AI6 406 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 LRRC37A5PQ49AS3 106 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 MORN5Q5VZ52 161 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 NOXA1Q86UR1 476 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 APRG1Q8IVJ8 170 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 DCANP1Q8TF63 244 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 Q8WTZ3 238 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 CHAC2Q8WUX2 184 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 PPP1R1CQ8WVI7 109 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 SPAG8Q99932 426 aaPredicted RBP6.83□□□□□ -1.32
VPS35-206ENST00000565228 MS4A6AQ9H2W1 248 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 GPN1Q9HCN4 374 aaPredicted RBP6.83□□□□□ -1.32
VPS35-206ENST00000565228 LYRM2Q9NU23 88 aaPredicted RBP6.83□□□□□ -1.32
VPS35-206ENST00000565228 RFNGQ9Y644 331 aa6.83□□□□□ -1.32
VPS35-206ENST00000565228 OR11H12B2RN74 326 aa6.82□□□□□ -1.32
VPS35-206ENST00000565228 HNRNPCP07910 306 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS35-206ENST00000565228 NPPCP23582 126 aa6.82□□□□□ -1.32
VPS35-206ENST00000565228 LYZP61626 148 aa6.82□□□□□ -1.32
VPS35-206ENST00000565228 DCTN2Q13561 401 aaKnown RBP6.82□□□□□ -1.32
VPS35-206ENST00000565228 HAGHQ16775 308 aa6.82□□□□□ -1.32
VPS35-206ENST00000565228 VWC2Q2TAL6 325 aa6.82□□□□□ -1.32
VPS35-206ENST00000565228 RBPMS2Q6ZRY4 209 aaKnown RBP6.82□□□□□ -1.32
VPS35-206ENST00000565228 CYP2G1PQ6ZSU1 146 aa6.82□□□□□ -1.32
VPS35-206ENST00000565228 WFDC3Q8IUB2 231 aa6.82□□□□□ -1.32
VPS35-206ENST00000565228 TMEM217Q8N7C4 229 aa6.82□□□□□ -1.32
VPS35-206ENST00000565228 SRD5A3Q9H8P0 318 aa6.82□□□□□ -1.32
VPS35-206ENST00000565228 WFDC1Q9HC57 220 aa6.82□□□□□ -1.32
VPS35-206ENST00000565228 SLC45A2Q9UMX9 530 aa6.82□□□□□ -1.32
VPS35-206ENST00000565228 SMCO3A2RU48 225 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms