RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 WDR83OSQ9Y284 106 aa3.22□□□□□ -1.89
VPS35-204ENST00000563884 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.21□□□□□ -1.9
VPS35-204ENST00000563884 IGHV3-66A0A0C4DH42 116 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 TRBV5-5A0A0J9YX44 114 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 A0A1W2PPK0 400 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 IGLC7A0M8Q6 106 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 RBFOX3A6NFN3 312 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 ERICH4A6NGS2 130 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 ZNF98A6NK75 572 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 TMEM212A6NML5 194 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 NME4O00746 187 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 SOCS1O15524 211 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 ATP8B1O43520 1251 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 FCGR3BO75015 233 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 NAPSAO96009 420 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 CD36P16671 472 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 DUTP33316 252 aaKnown RBP3.21□□□□□ -1.9
VPS35-204ENST00000563884 ETV6P41212 452 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 RORCP51449 518 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 MRPS15P82914 257 aaKnown RBP3.21□□□□□ -1.9
VPS35-204ENST00000563884 SPCS2Q15005 226 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 TP53I3Q53FA7 332 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 EBLN2Q6P2I7 272 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 ZNF880Q6PDB4 577 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 TOMM20LQ6UXN7 152 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 ZNF600Q6ZNG1 722 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 ZNF493Q6ZR52 646 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 KCTD9Q7L273 389 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 PUSL1Q8N0Z8 303 aaKnown RBP3.21□□□□□ -1.9
VPS35-204ENST00000563884 TMEM256Q8N2U0 113 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 ZNF709Q8N972 641 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 NSMCE2Q96MF7 247 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 IL4I1Q96RQ9 567 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 NIPSNAP1Q9BPW8 284 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 SAV1Q9H4B6 383 aaPredicted RBP3.21□□□□□ -1.9
VPS35-204ENST00000563884 ZNF446Q9NWS9 450 aa3.21□□□□□ -1.9
VPS35-204ENST00000563884 RCL1Q9Y2P8 373 aaKnown RBP3.21□□□□□ -1.9
VPS35-204ENST00000563884 F11RQ9Y624 299 aaKnown RBP3.21□□□□□ -1.9
VPS35-204ENST00000563884 TRBV6-6A0A0A6YYG2 114 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 ZNF705GA8MUZ8 300 aaPredicted RBP3.2□□□□□ -1.9
VPS35-204ENST00000563884 E7EUB6 86 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 CRTAPO75718 401 aaPredicted RBP3.2□□□□□ -1.9
VPS35-204ENST00000563884 DIRAS3O95661 229 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 FAM107AO95990 144 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 RLN2P04090 185 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 SERPINE2P07093 398 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 CELP19835 753 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 ID1P41134 155 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 TAS2R43P59537 309 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 MRPL28Q13084 256 aaKnown RBP3.2□□□□□ -1.9
VPS35-204ENST00000563884 YIF1BQ5BJH7 314 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 OR2G6Q5TZ20 316 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 OR5AK2Q8NH90 309 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 OR10J5Q8NHC4 309 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 COQ8AQ8NI60 647 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 GIPC3Q8TF64 312 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 RASL10AQ92737 203 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 TMEM203Q969S6 136 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 MOB3AQ96BX8 217 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 FAM218AQ96MZ4 157 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 FEVQ99581 238 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 CENPOQ9BU64 300 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 SLC35B3Q9H1N7 401 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 HRASLSQ9HDD0 168 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 PRR34Q9NV39 138 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 BET1LQ9NYM9 111 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 TAS2R4Q9NYW5 299 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 CKLFQ9UBR5 152 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 RPH3ALQ9UNE2 315 aa3.2□□□□□ -1.9
VPS35-204ENST00000563884 IGHV3-21A0A0B4J1V1 117 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 OR4C45A6NMZ5 311 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 SNURFLB1AK76 121 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 K7EIM0 57 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 GSTZ1O43708 216 aaPredicted RBP3.19□□□□□ -1.9
VPS35-204ENST00000563884 SLC22A5O76082 557 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 OR13C7P0DN81 318 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 CRYBB3P26998 211 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 NUP62P37198 522 aaPredicted RBP3.19□□□□□ -1.9
VPS35-204ENST00000563884 NPBWR1P48145 328 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 GBX2P52951 348 aaPredicted RBP3.19□□□□□ -1.9
VPS35-204ENST00000563884 KRTAP10-8P60410 259 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 PRCDQ00LT1 54 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 MS4A2Q01362 244 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 ST3GAL4Q11206 333 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 TMED1Q13445 227 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 ZNF79Q15937 498 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 VWC2Q2TAL6 325 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 SAMD13Q5VXD3 122 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 OR2T5Q6IEZ7 315 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 GLIPR1L1Q6UWM5 242 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 TMEM144Q7Z5S9 345 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 OR4A4PQ8NGN8 299 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 OR2T29Q8NH02 315 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 TMEM263Q8WUH6 116 aaKnown RBP3.19□□□□□ -1.9
VPS35-204ENST00000563884 DNAJC9Q8WXX5 260 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 LSM10Q969L4 123 aaKnown RBP3.19□□□□□ -1.9
VPS35-204ENST00000563884 ZNF184Q99676 751 aaPredicted RBP3.19□□□□□ -1.9
VPS35-204ENST00000563884 SOSTQ9BQB4 213 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 BANF2Q9H503 90 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 C12orf4Q9NQ89 552 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms