RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 HNRNPCP07910 306 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLK3-207ENST00000562389 ZNF90Q03938 601 aa12.54□□□□□ -0.4
CLK3-207ENST00000562389 AKR1C1Q04828 323 aa12.54□□□□□ -0.4
CLK3-207ENST00000562389 USF2Q15853 346 aaPredicted RBP12.54□□□□□ -0.4
CLK3-207ENST00000562389 TMEM144Q7Z5S9 345 aa12.54□□□□□ -0.4
CLK3-207ENST00000562389 NEURL2Q9BR09 285 aa12.54□□□□□ -0.4
CLK3-207ENST00000562389 LYRM2Q9NU23 88 aaPredicted RBP12.54□□□□□ -0.4
CLK3-207ENST00000562389 ALG5Q9Y673 324 aa12.54□□□□□ -0.4
CLK3-207ENST00000562389 U3KQE9 123 aa12.54□□□□□ -0.4
CLK3-207ENST00000562389 DEDDO75618 318 aa12.53□□□□□ -0.4
CLK3-207ENST00000562389 CD7P09564 240 aa12.53□□□□□ -0.4
CLK3-207ENST00000562389 BCAP31P51572 246 aa12.53□□□□□ -0.4
CLK3-207ENST00000562389 CAV2P51636 162 aa12.53□□□□□ -0.4
CLK3-207ENST00000562389 H2BFSP57053 126 aa12.53□□□□□ -0.4
CLK3-207ENST00000562389 RGS21Q2M5E4 152 aa12.53□□□□□ -0.4
CLK3-207ENST00000562389 FAM90A2PQ658T7 463 aa12.53□□□□□ -0.4
CLK3-207ENST00000562389 RNF125Q96EQ8 232 aa12.53□□□□□ -0.4
CLK3-207ENST00000562389 NARS2Q96I59 477 aaKnown RBP12.53□□□□□ -0.4
CLK3-207ENST00000562389 GGACTQ9BVM4 153 aa12.53□□□□□ -0.4
CLK3-207ENST00000562389 SMCO3A2RU48 225 aa12.52□□□□□ -0.41
CLK3-207ENST00000562389 IGHV4-30-4P0DP06 118 aa12.52□□□□□ -0.41
CLK3-207ENST00000562389 RRAS2P62070 204 aaPredicted RBP12.52□□□□□ -0.41
CLK3-207ENST00000562389 ARL16Q0P5N6 197 aa12.52□□□□□ -0.41
CLK3-207ENST00000562389 LILRB2Q8N423 598 aa12.52□□□□□ -0.41
CLK3-207ENST00000562389 MGAT4CQ9UBM8 478 aa12.52□□□□□ -0.41
CLK3-207ENST00000562389 RABAC1Q9UI14 185 aa12.52□□□□□ -0.41
CLK3-207ENST00000562389 IGHV3-66A0A0C4DH42 116 aa12.51□□□□□ -0.41
CLK3-207ENST00000562389 FAM24AA6NFZ4 105 aa12.51□□□□□ -0.41
CLK3-207ENST00000562389 CFDP00746 253 aaPredicted RBP12.51□□□□□ -0.41
CLK3-207ENST00000562389 TCF24Q7RTU0 167 aa12.51□□□□□ -0.41
CLK3-207ENST00000562389 GRAMD2BQ96HH9 432 aa12.51□□□□□ -0.41
CLK3-207ENST00000562389 NPVFQ9HCQ7 196 aa12.51□□□□□ -0.41
CLK3-207ENST00000562389 C19orf73Q9NVV2 129 aa12.51□□□□□ -0.41
CLK3-207ENST00000562389 OR4C46A6NHA9 309 aa12.5□□□□□ -0.41
CLK3-207ENST00000562389 DFFBO76075 338 aa12.5□□□□□ -0.41
CLK3-207ENST00000562389 RLN2P04090 185 aa12.5□□□□□ -0.41
CLK3-207ENST00000562389 FRMD6-AS1P0C7T7 363 aa12.5□□□□□ -0.41
CLK3-207ENST00000562389 NUP62P37198 522 aaPredicted RBP12.5□□□□□ -0.41
CLK3-207ENST00000562389 P2RY1P47900 373 aa12.5□□□□□ -0.41
CLK3-207ENST00000562389 EIF2B2P49770 351 aaKnown RBP12.5□□□□□ -0.41
CLK3-207ENST00000562389 SULT1A1P50225 295 aa12.5□□□□□ -0.41
CLK3-207ENST00000562389 OR2F1Q13607 317 aa12.5□□□□□ -0.41
CLK3-207ENST00000562389 OXA1LQ15070 435 aa12.5□□□□□ -0.41
CLK3-207ENST00000562389 LRRC37A5PQ49AS3 106 aa12.5□□□□□ -0.41
CLK3-207ENST00000562389 TMEM252Q8N6L7 170 aa12.5□□□□□ -0.41
CLK3-207ENST00000562389 IGSF23A1L1A6 192 aa12.49□□□□□ -0.41
CLK3-207ENST00000562389 OR11H12B2RN74 326 aa12.49□□□□□ -0.41
CLK3-207ENST00000562389 E5RGE8 158 aa12.49□□□□□ -0.41
CLK3-207ENST00000562389 LYZP61626 148 aa12.49□□□□□ -0.41
CLK3-207ENST00000562389 SLC38A11Q08AI6 406 aa12.49□□□□□ -0.41
CLK3-207ENST00000562389 C16orf54Q6UWD8 224 aa12.49□□□□□ -0.41
CLK3-207ENST00000562389 CYP2G1PQ6ZSU1 146 aa12.49□□□□□ -0.41
CLK3-207ENST00000562389 STX12Q86Y82 276 aa12.49□□□□□ -0.41
CLK3-207ENST00000562389 BPIFCQ8NFQ6 507 aa12.49□□□□□ -0.41
CLK3-207ENST00000562389 PPP1R1CQ8WVI7 109 aa12.49□□□□□ -0.41
CLK3-207ENST00000562389 PBDC1Q9BVG4 233 aa12.49□□□□□ -0.41
CLK3-207ENST00000562389 TRAV2A0A0B4J234 112 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 H0YIZ8 118 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 BUB3O43684 328 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 CST7O76096 145 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 PAFAH1B2P68402 229 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 TEPPQ6URK8 271 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 DEFB125Q8N687 156 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 GLMPQ8WWB7 406 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 FAM110AQ9BQ89 295 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 WFDC10AQ9H1F0 79 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 TUBA4BQ9H853 241 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 OR5AC2Q9NZP5 309 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 PFDN2Q9UHV9 154 aa12.48□□□□□ -0.41
CLK3-207ENST00000562389 IGKV3-7A0A075B6H7 116 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 HELTA6NFD8 242 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 MPC2O95563 127 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 PET100P0DJ07 73 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 GATA2P23769 480 aaPredicted RBP12.47□□□□□ -0.41
CLK3-207ENST00000562389 S100A11P31949 105 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 SELENOTP62341 195 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 HBG1P69891 147 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 HBG2P69892 147 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 VWC2Q2TAL6 325 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 TMEM182Q6ZP80 229 aaPredicted RBP12.47□□□□□ -0.41
CLK3-207ENST00000562389 TMEM217Q8N7C4 229 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 MED28Q9H204 178 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 MS4A6AQ9H2W1 248 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 SRD5A3Q9H8P0 318 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 SLC45A2Q9UMX9 530 aa12.47□□□□□ -0.41
CLK3-207ENST00000562389 NHLRC4P0CG21 123 aaPredicted RBP12.46□□□□□ -0.41
CLK3-207ENST00000562389 CXCL3P19876 107 aa12.46□□□□□ -0.41
CLK3-207ENST00000562389 RPL11P62913 178 aaKnown RBP12.46□□□□□ -0.41
CLK3-207ENST00000562389 ODF3L2Q3SX64 289 aa12.46□□□□□ -0.41
CLK3-207ENST00000562389 GBGT1Q8N5D6 347 aa12.46□□□□□ -0.41
CLK3-207ENST00000562389 TMEM147Q9BVK8 224 aa12.46□□□□□ -0.41
CLK3-207ENST00000562389 SLC25A31Q9H0C2 315 aa12.46□□□□□ -0.41
CLK3-207ENST00000562389 UQCC1Q9NVA1 299 aa12.46□□□□□ -0.41
CLK3-207ENST00000562389 UBQLN2Q9UHD9 624 aa12.46□□□□□ -0.41
CLK3-207ENST00000562389 DNASE2O00115 360 aaPredicted RBP12.45□□□□□ -0.42
CLK3-207ENST00000562389 TFPI2P48307 235 aa12.45□□□□□ -0.42
CLK3-207ENST00000562389 AP2S1P53680 142 aaPredicted RBP12.45□□□□□ -0.42
CLK3-207ENST00000562389 CMC4P56277 68 aaPredicted RBP12.45□□□□□ -0.42
CLK3-207ENST00000562389 PLP1P60201 277 aa12.45□□□□□ -0.42
CLK3-207ENST00000562389 EWSR1Q01844 656 aaKnown RBP eCLIP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms