RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 KLK9Q2XQG4 91 aa10.78□□□□□ -0.68
LDLR-213ENST00000560502 ACOT6Q3I5F7 207 aaPredicted RBP10.78□□□□□ -0.68
LDLR-213ENST00000560502 TTC9CQ8N5M4 171 aa10.78□□□□□ -0.68
LDLR-213ENST00000560502 OR11H1Q8NG94 326 aa10.78□□□□□ -0.68
LDLR-213ENST00000560502 FAM213BQ8TBF2 198 aa10.78□□□□□ -0.68
LDLR-213ENST00000560502 MARC2Q969Z3 335 aa10.78□□□□□ -0.68
LDLR-213ENST00000560502 UBE2E2Q96LR5 201 aa10.78□□□□□ -0.68
LDLR-213ENST00000560502 GGTLC1Q9BX51 225 aa10.78□□□□□ -0.68
LDLR-213ENST00000560502 GNB4Q9HAV0 340 aa10.78□□□□□ -0.68
LDLR-213ENST00000560502 PLA2G2EQ9NZK7 142 aa10.78□□□□□ -0.68
LDLR-213ENST00000560502 KLK9Q9UKQ9 250 aa10.78□□□□□ -0.68
LDLR-213ENST00000560502 MFSD2BA6NFX1 497 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 I3L521 148 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 DEFA4P12838 97 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 M6PRP20645 277 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 INSL3P51460 131 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 SELENOTP62341 195 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 ZNF616Q08AN1 781 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 GAMTQ14353 236 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 CASC10Q5T4H9 136 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 THAP8Q8NA92 274 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 TMEM116Q8NCL8 245 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 MUC7Q8TAX7 377 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 PCNPQ8WW12 178 aaKnown RBP10.77□□□□□ -0.69
LDLR-213ENST00000560502 MGST2Q99735 147 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 KLK15Q9H2R5 256 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 THYN1Q9P016 225 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 SMAD5-AS1Q9Y6J3 95 aa10.77□□□□□ -0.69
LDLR-213ENST00000560502 AGPAT2O15120 278 aa10.76□□□□□ -0.69
LDLR-213ENST00000560502 IGLV1-40P01703 118 aa10.76□□□□□ -0.69
LDLR-213ENST00000560502 REG1AP05451 166 aa10.76□□□□□ -0.69
LDLR-213ENST00000560502 H2AFB1P0C5Y9 115 aa10.76□□□□□ -0.69
LDLR-213ENST00000560502 FFAR4Q5NUL3 377 aa10.76□□□□□ -0.69
LDLR-213ENST00000560502 SBSPONQ8IVN8 264 aa10.76□□□□□ -0.69
LDLR-213ENST00000560502 ZNF491Q8N8L2 437 aa10.76□□□□□ -0.69
LDLR-213ENST00000560502 OR1N2Q8NGR9 330 aa10.76□□□□□ -0.69
LDLR-213ENST00000560502 MISP3Q96FF7 219 aa10.76□□□□□ -0.69
LDLR-213ENST00000560502 TNCP24821 2201 aa10.76□□□□□ -0.69
LDLR-213ENST00000560502 DNAH1Q9P2D7 4330 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 SCGB2A1O75556 95 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 FABP1P07148 127 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 PRR20EP86478 221 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 PRR20CP86479 221 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 PRR20DP86480 221 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 PRR20BP86481 221 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 PRR20AP86496 221 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 NDPQ00604 133 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 AKIRIN2Q53H80 203 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 MBD3L1Q8WWY6 194 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 RCHY1Q96PM5 261 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 PBDC1Q9BVG4 233 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 ACTR3CQ9C0K3 210 aaPredicted RBP10.75□□□□□ -0.69
LDLR-213ENST00000560502 HRH4Q9H3N8 390 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 FNDC4Q9H6D8 234 aaPredicted RBP10.75□□□□□ -0.69
LDLR-213ENST00000560502 RPRMQ9NS64 109 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 PXMP4Q9Y6I8 212 aa10.75□□□□□ -0.69
LDLR-213ENST00000560502 IGLV11-55A0A075B6I3 123 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 CTXND1A0A1B0GTU2 59 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 G3V318 75 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 ATP6V0E1O15342 81 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 BRI3O95415 125 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 MFAP2P55001 183 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 ELLP55199 621 aaPredicted RBP10.74□□□□□ -0.69
LDLR-213ENST00000560502 B2MP61769 119 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 PMS2P11Q13670 270 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 ACSM6Q6P461 480 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 OR10G4Q8NGN3 311 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 OR10G9Q8NGN4 311 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 OR10G7Q8NGN6 311 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 OR4X1Q8NH49 305 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 CITED4Q96RK1 184 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 RNF2Q99496 336 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 TRGV9Q99603 122 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 SMDT1Q9H4I9 107 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 SLC39A9Q9NUM3 307 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 SLC45A2Q9UMX9 530 aa10.74□□□□□ -0.69
LDLR-213ENST00000560502 EPPK1P58107 5090 aaKnown RBP10.73□□□□□ -0.69
LDLR-213ENST00000560502 I3L2K1 104 aa10.73□□□□□ -0.69
LDLR-213ENST00000560502 MT-CO2P00403 227 aa10.73□□□□□ -0.69
LDLR-213ENST00000560502 EGR2P11161 476 aaPredicted RBP10.73□□□□□ -0.69
LDLR-213ENST00000560502 TAGLN2P37802 199 aaKnown RBP10.73□□□□□ -0.69
LDLR-213ENST00000560502 C19orf54Q5BKX5 351 aa10.73□□□□□ -0.69
LDLR-213ENST00000560502 CYP2G1PQ6ZSU1 146 aa10.73□□□□□ -0.69
LDLR-213ENST00000560502 STPG3Q8N7X2 389 aa10.73□□□□□ -0.69
LDLR-213ENST00000560502 ACY3Q96HD9 319 aa10.73□□□□□ -0.69
LDLR-213ENST00000560502 ATP6V0BQ99437 205 aa10.73□□□□□ -0.69
LDLR-213ENST00000560502 TRAV30A0A087WSZ9 112 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 TRAV41A0A0B4J266 112 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 KRBOX1C9JBD0 128 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 H3BUA1 57 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 OVOL1O14753 267 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 OR10J1P30954 320 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 FCGR2BP31994 310 aaPredicted RBP10.72□□□□□ -0.69
LDLR-213ENST00000560502 CDC34P49427 236 aaPredicted RBP10.72□□□□□ -0.69
LDLR-213ENST00000560502 FHITP49789 147 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 RAB9AP51151 201 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 RND2P52198 227 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 UNQ5815/PRO19632Q6UWF5 114 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 RPP25LQ8N5L8 163 aaKnown RBP10.72□□□□□ -0.69
LDLR-213ENST00000560502 VN1R17PQ8TDU5 208 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms