RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 FAM172AQ8WUF8 416 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 SLAMF6Q96DU3 332 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 ZC2HC1AQ96GY0 325 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 GINS3Q9BRX5 216 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 PRADC1Q9BSG0 188 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 ADAT1Q9BUB4 502 aaKnown RBP0.57□□□□□ -2.32
USP3-209ENST00000558925 PCTPQ9UKL6 214 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 EPDR1Q9UM22 224 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 TECTAO75443 2155 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 TNRC6AQ8NDV7 1962 aaKnown RBP0.57□□□□□ -2.32
USP3-209ENST00000558925 MED1Q15648 1581 aaPredicted RBP0.57□□□□□ -2.32
USP3-209ENST00000558925 RTL1A6NKG5 1358 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 ARHGEF28Q8N1W1 1705 aaKnown RBP0.56□□□□□ -2.32
USP3-209ENST00000558925 COL6A6A6NMZ7 2263 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 MEIKINA0A087WXM9 373 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 B4DSR2 109 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 G3V2T6 193 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 TMEM256-PLSCR3K7ERE1 68 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 BANF1O75531 89 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 LYZL6O75951 148 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 ATG12O94817 140 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 GADD45GO95257 159 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 TCL1BO95988 128 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 IFNA1P01562 189 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 IFNA7P01567 189 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 NEFHP12036 1026 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 COX6A1P12074 109 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 RNASE3P12724 160 aaKnown RBP0.56□□□□□ -2.32
USP3-209ENST00000558925 MIFP14174 115 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 GLRXP35754 106 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 SRP14P37108 136 aaKnown RBP0.56□□□□□ -2.32
USP3-209ENST00000558925 INSL3P51460 131 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 CRYBA4P53673 196 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 RAB4BP61018 213 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 GNG3P63215 75 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 TSNQ15631 228 aaKnown RBP0.56□□□□□ -2.32
USP3-209ENST00000558925 ESRGQ1W209 222 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 BRMS1LQ5PSV4 323 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 C10orf55Q5SWW7 151 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 LYRM7Q5U5X0 104 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 Q6ZSA8 131 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 DEFB128Q7Z7B8 93 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 OR4D11Q8NGI4 311 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 NEK7Q8TDX7 302 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 SERPINI1Q99574 410 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 PRRT1Q99946 306 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 NAA38Q9BRA0 125 aaKnown RBP0.56□□□□□ -2.32
USP3-209ENST00000558925 TMEM126AQ9H061 195 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 BCL2L10Q9HD36 194 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 TAS2R4Q9NYW5 299 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 PYCARDQ9ULZ3 195 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 UFC1Q9Y3C8 167 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 RIMBP3CA6NJZ7 1639 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 RIMBP3BA6NNM3 1639 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 RIMBP3Q9UFD9 1639 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 KMT2BQ9UMN6 2715 aaPredicted RBP0.56□□□□□ -2.32
USP3-209ENST00000558925 COL4A5P29400 1685 aa0.56□□□□□ -2.32
USP3-209ENST00000558925 RIC1Q4ADV7 1423 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 CHD3Q12873 2000 aaKnown RBP0.55□□□□□ -2.32
USP3-209ENST00000558925 SNRNP200O75643 2136 aaKnown RBP0.55□□□□□ -2.32
USP3-209ENST00000558925 TAF1LQ8IZX4 1826 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 SBF1O95248 1867 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 UNC13CQ8NB66 2214 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 ODAMA1E959 279 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 H7C1C5 153 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 NDUFB3O43676 98 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 OR1I1O60431 355 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 UBL3O95164 117 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 NDUFC2O95298 119 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 FABP1P07148 127 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 CXCL1P09341 107 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 BAALC-AS2P0C853 105 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 LYNX1P0DP58 116 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 NFYBP25208 207 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 PHBP35232 272 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 ZNF93P35789 620 aaPredicted RBP0.55□□□□□ -2.32
USP3-209ENST00000558925 LCN6P62502 163 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 CNBPP62633 177 aaKnown RBP0.55□□□□□ -2.32
USP3-209ENST00000558925 AKR1C8PQ5T2L2 129 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 TMED4Q7Z7H5 227 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 CLECL1Q8IZS7 167 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 SLC30A7Q8NEW0 376 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 OR13C6PQ8NH95 151 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 CARD19Q96LW7 228 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 LYSMD1Q96S90 227 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 IMUPQ9GZP8 106 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 RNF122Q9H9V4 155 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 ACER3Q9NUN7 267 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 IL20Q9NYY1 176 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 SLC35A3Q9Y2D2 325 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 DLG5Q8TDM6 1919 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 KIAA1549Q9HCM3 1950 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 CASP8AP2Q9UKL3 1982 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 EIF3AQ14152 1382 aaKnown RBP0.55□□□□□ -2.32
USP3-209ENST00000558925 FMN1Q68DA7 1419 aa0.55□□□□□ -2.32
USP3-209ENST00000558925 NUP210LQ5VU65 1888 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 PKD1L2Q7Z442 2459 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 CACNA1AO00555 2505 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 TRBV6-8A0A0A6YYG3 113 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 TRAV12-1A0A0B4J245 112 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms