RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NUP35Q8NFH5 326 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 TMEM186Q96B77 213 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 MRPL32Q9BYC8 188 aaKnown RBP10.33□□□□□ -0.76
LDLR-207ENST00000558013 WNT10AQ9GZT5 417 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 SHISA9B4DS77 424 aa10.32□□□□□ -0.76
LDLR-207ENST00000558013 AMY1AP04745 511 aa10.32□□□□□ -0.76
LDLR-207ENST00000558013 BATFQ16520 125 aa10.32□□□□□ -0.76
LDLR-207ENST00000558013 TMEM155Q4W5P6 130 aa10.32□□□□□ -0.76
LDLR-207ENST00000558013 PGPA6NDG6 321 aa10.32□□□□□ -0.76
LDLR-207ENST00000558013 APCSP02743 223 aa10.32□□□□□ -0.76
LDLR-207ENST00000558013 MAJINQ3KP22 176 aa10.32□□□□□ -0.76
LDLR-207ENST00000558013 LCN12Q6JVE5 192 aa10.32□□□□□ -0.76
LDLR-207ENST00000558013 TMEM68Q96MH6 324 aa10.32□□□□□ -0.76
LDLR-207ENST00000558013 SPTBN1Q01082 2364 aaKnown RBP10.32□□□□□ -0.76
LDLR-207ENST00000558013 M0R143 59 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 LY6HO94772 140 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 RAB4AP20338 218 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 VSTM2AQ8TAG5 236 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 SSUH2Q9Y2M2 353 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 DIRC3C9JPN6 131 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 SLC25A5P05141 298 aaKnown RBP10.31□□□□□ -0.76
LDLR-207ENST00000558013 COX7A1P24310 79 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 ATP5IP56385 69 aaPredicted RBP10.31□□□□□ -0.76
LDLR-207ENST00000558013 SSTP61278 116 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 TMEM30BQ3MIR4 351 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 TCF24Q7RTU0 167 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 SPACA3Q8IXA5 215 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 NEU1Q99519 415 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 VAMP8Q9BV40 100 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 WNK2Q9Y3S1 2297 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 TRAV8-1A0A0A6YYK1 113 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 TRBV9A0A0B4J1U6 114 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 IZUMO1RA6ND01 250 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 HIGD1CA8MV81 97 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 VMA21Q3ZAQ7 101 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 LBHQ53QV2 105 aaPredicted RBP10.31□□□□□ -0.76
LDLR-207ENST00000558013 WDR73Q6P4I2 378 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 NIT1Q86X76 327 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 KIR3DL3Q8N743 410 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 TSKUQ8WUA8 353 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 MBD6Q96DN6 1003 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 ZNF331Q9NQX6 463 aaPredicted RBP10.31□□□□□ -0.76
LDLR-207ENST00000558013 COL6A6A6NMZ7 2263 aa10.31□□□□□ -0.76
LDLR-207ENST00000558013 M0QZ24 198 aa10.3□□□□□ -0.76
LDLR-207ENST00000558013 GRNP28799 593 aaKnown RBP10.3□□□□□ -0.76
LDLR-207ENST00000558013 C18orf32Q8TCD1 76 aa10.3□□□□□ -0.76
LDLR-207ENST00000558013 SUB1P53999 127 aaKnown RBP eCLIP10.3□□□□□ -0.769e-7■■■□□ 17.7
LDLR-207ENST00000558013 TBR1Q16650 682 aa10.3□□□□□ -0.76
LDLR-207ENST00000558013 CYB5R2Q6BCY4 276 aa10.3□□□□□ -0.76
LDLR-207ENST00000558013 THAP8Q8NA92 274 aa10.3□□□□□ -0.76
LDLR-207ENST00000558013 KCNS1Q96KK3 526 aa10.3□□□□□ -0.76
LDLR-207ENST00000558013 TMEM133Q9H2Q1 129 aa10.3□□□□□ -0.76
LDLR-207ENST00000558013 FBXL15Q9H469 300 aa10.3□□□□□ -0.76
LDLR-207ENST00000558013 IGHV1-69-2A0A0G2JMI3 117 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 MT-ND6P03923 174 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 C3orf79P0CE67 100 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 MYCNOSP40205 109 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 BPIFB3P59826 476 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 OR1L4Q8NGR5 311 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 LINC01560Q8TB33 94 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 C7orf69Q9H7B7 122 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 EPDR1Q9UM22 224 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 IGHV2-26A0A0B4J1V2 119 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 INS-IGF2F8WCM5 200 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 ZNF324O75467 553 aaPredicted RBP10.29□□□□□ -0.76
LDLR-207ENST00000558013 HLA-DQA1P01909 254 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 NBEAP1P0C6P0 100 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 CASP6P55212 293 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 LDLRAD2Q5SZI1 272 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 MIEN1Q9BRT3 115 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 ZNF586Q9NXT0 402 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 JKAMPQ9P055 326 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 S4R3C0 116 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 SH2D7A6NKC9 451 aaPredicted RBP10.29□□□□□ -0.76
LDLR-207ENST00000558013 PMCHL1Q16048 86 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 LINC00311Q8N616 119 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 OR2D3Q8NGH3 330 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 ZNF596Q8TC21 504 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 VPS13CQ709C8 3753 aa10.29□□□□□ -0.76
LDLR-207ENST00000558013 RPL27AP46776 148 aaKnown RBP10.28□□□□□ -0.76
LDLR-207ENST00000558013 TFPI2P48307 235 aa10.28□□□□□ -0.76
LDLR-207ENST00000558013 UBE2G1P62253 170 aa10.28□□□□□ -0.76
LDLR-207ENST00000558013 TMEM183BQ1AE95 376 aa10.28□□□□□ -0.76
LDLR-207ENST00000558013 OR10J3Q5JRS4 329 aa10.28□□□□□ -0.76
LDLR-207ENST00000558013 OR4A5Q8NH83 315 aa10.28□□□□□ -0.76
LDLR-207ENST00000558013 C20orf144Q9BQM9 153 aa10.28□□□□□ -0.76
LDLR-207ENST00000558013 SIGLEC9Q9Y336 463 aa10.28□□□□□ -0.76
LDLR-207ENST00000558013 INSIG2Q9Y5U4 225 aa10.28□□□□□ -0.76
LDLR-207ENST00000558013 CHD8Q9HCK8 2581 aa10.28□□□□□ -0.76
LDLR-207ENST00000558013 FOXA3P55318 350 aaPredicted RBP10.28□□□□□ -0.76
LDLR-207ENST00000558013 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.27□□□□□ -0.76
LDLR-207ENST00000558013 CRYGCP07315 174 aa10.27□□□□□ -0.76
LDLR-207ENST00000558013 ZNF137PP52743 207 aa10.27□□□□□ -0.76
LDLR-207ENST00000558013 EXOC3-AS1Q8N2X6 119 aa10.27□□□□□ -0.76
LDLR-207ENST00000558013 RNF2Q99496 336 aa10.27□□□□□ -0.76
LDLR-207ENST00000558013 RALYQ9UKM9 306 aaKnown RBP10.27□□□□□ -0.76
LDLR-207ENST00000558013 ZNF835Q9Y2P0 537 aa10.27□□□□□ -0.76
LDLR-207ENST00000558013 SPTBN4Q9H254 2564 aa10.27□□□□□ -0.76
LDLR-207ENST00000558013 SPTAN1Q13813 2472 aaKnown RBP10.27□□□□□ -0.77
LDLR-207ENST00000558013 IGHV1-3A0A0C4DH29 117 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms