RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PPP1R35Q8TAP8 253 aa9.96□□□□□ -0.81
LDLR-205ENST00000557933 SSUH2Q9Y2M2 353 aa9.96□□□□□ -0.81
LDLR-205ENST00000557933 KLF3P57682 345 aaPredicted RBP9.96□□□□□ -0.81
LDLR-205ENST00000557933 CD69Q07108 199 aa9.96□□□□□ -0.81
LDLR-205ENST00000557933 FAM27E3Q08E93 113 aa9.96□□□□□ -0.81
LDLR-205ENST00000557933 AARDQ4LEZ3 155 aa9.96□□□□□ -0.81
LDLR-205ENST00000557933 BHLHA15Q7RTS1 189 aaPredicted RBP9.96□□□□□ -0.81
LDLR-205ENST00000557933 TEX45Q8NA69 505 aa9.96□□□□□ -0.81
LDLR-205ENST00000557933 ALKBH7Q9BT30 221 aaPredicted RBP9.96□□□□□ -0.81
LDLR-205ENST00000557933 ZNF329Q86UD4 541 aa9.96□□□□□ -0.82
LDLR-205ENST00000557933 CIARTQ8N365 385 aaPredicted RBP9.96□□□□□ -0.82
LDLR-205ENST00000557933 MBD6Q96DN6 1003 aa9.96□□□□□ -0.82
LDLR-205ENST00000557933 BET1LQ9NYM9 111 aa9.96□□□□□ -0.82
LDLR-205ENST00000557933 COX11Q9Y6N1 276 aa9.96□□□□□ -0.82
LDLR-205ENST00000557933 RAI1Q7Z5J4 1906 aaPredicted RBP9.95□□□□□ -0.82
LDLR-205ENST00000557933 C2orf70A6NJV1 201 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 CNTFRP26992 372 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 RBX1P62877 108 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 TNFAIP6P98066 277 aaPredicted RBP9.95□□□□□ -0.82
LDLR-205ENST00000557933 TMEM177Q53S58 311 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 GTSF1Q8WW33 167 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 PROCRQ9UNN8 238 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 TRBV9A0A0B4J1U6 114 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 RTL8BQ17RB0 113 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 OR4F17Q8NGA8 305 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 OR8B3Q8NGG8 313 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 ZNF71Q9NQZ8 489 aaPredicted RBP9.95□□□□□ -0.82
LDLR-205ENST00000557933 DKK4Q9UBT3 224 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 PRNDQ9UKY0 176 aa9.95□□□□□ -0.82
LDLR-205ENST00000557933 TRAV9-2A0A087WT02 112 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 TMSB15BA0A087X1C1 80 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 PSG1P11464 419 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 UQCRFS1P47985 274 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 EXOC3-AS1Q8N2X6 119 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 ZNF738Q8NE65 137 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 hADV38S2A0JD32 116 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 FBLN7Q53RD9 439 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 LDLRAD2Q5SZI1 272 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 ZNF474Q6S9Z5 364 aaPredicted RBP9.94□□□□□ -0.82
LDLR-205ENST00000557933 SEM1Q6ZVN7 128 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 KLHDC1Q8N7A1 406 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 CCL17Q92583 94 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 GAFA1Q96PS6 74 aa9.94□□□□□ -0.82
LDLR-205ENST00000557933 TRAV9-1A0A075B6T8 112 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 A0A1W2PRE2 83 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 DEFB109BQ30KR1 87 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 WFDC3Q8IUB2 231 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 ZNF430Q9H8G1 570 aaPredicted RBP9.93□□□□□ -0.82
LDLR-205ENST00000557933 SLC25A10Q9UBX3 287 aaPredicted RBP9.93□□□□□ -0.82
LDLR-205ENST00000557933 ZNF257Q9Y2Q1 563 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 COL6A6A6NMZ7 2263 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 ZNF292O60281 2723 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 IGHV1-24A0A0C4DH33 117 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 J3QW42 95 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 CGB3P0DN86 165 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 CGB7P0DN87 165 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 IGFL2Q6UWQ7 119 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 OR10X1Q8NGY0 326 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 FXYD5Q96DB9 178 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 CGB1A6NKQ9 187 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 ZNF891A8MT65 544 aaPredicted RBP9.93□□□□□ -0.82
LDLR-205ENST00000557933 C22orf46C9J442 243 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 FCN3O75636 299 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 UBE2V1Q13404 147 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 PDPNQ86YL7 162 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 ZNF596Q8TC21 504 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 CORO2AQ92828 525 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 RALYQ9UKM9 306 aaKnown RBP9.93□□□□□ -0.82
LDLR-205ENST00000557933 SLC25A15Q9Y619 301 aa9.93□□□□□ -0.82
LDLR-205ENST00000557933 IGKV1D-37A0A075B6S9 117 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 LOC389332A0A1B0GUA5 103 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 CEACAM4O75871 244 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 IGHV1-46P01743 117 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 FAM106CPP0CH98 169 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 FAM106AQ4KMX7 169 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 PRNTQ86SH4 94 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 C22orf15Q8WYQ4 148 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 TMEM70Q9BUB7 260 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 LY96Q9Y6Y9 160 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 IGHV2-26A0A0B4J1V2 119 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 NKX6-3A6NJ46 265 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 FAM90A9PA6NNJ1 464 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 ERHP84090 104 aaKnown RBP9.92□□□□□ -0.82
LDLR-205ENST00000557933 MBNL2Q5VZF2 373 aaKnown RBP9.92□□□□□ -0.82
LDLR-205ENST00000557933 AMMECR1LQ6DCA0 310 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 LYPD2Q6UXB3 125 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 C17orf77Q96MU5 243 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 RNF7Q9UBF6 113 aa9.92□□□□□ -0.82
LDLR-205ENST00000557933 VPS13CQ709C8 3753 aa9.91□□□□□ -0.82
LDLR-205ENST00000557933 PSMB11A5LHX3 300 aa9.91□□□□□ -0.82
LDLR-205ENST00000557933 LEPROTL1O95214 131 aa9.91□□□□□ -0.82
LDLR-205ENST00000557933 IGHV3OR16-8A0A075B7F1 116 aa9.91□□□□□ -0.82
LDLR-205ENST00000557933 IGLC7A0M8Q6 106 aa9.91□□□□□ -0.82
LDLR-205ENST00000557933 IGLV1-44P01699 117 aa9.91□□□□□ -0.82
LDLR-205ENST00000557933 TNFSF4P23510 183 aa9.91□□□□□ -0.82
LDLR-205ENST00000557933 KIR2DS2P43631 304 aa9.91□□□□□ -0.82
LDLR-205ENST00000557933 VPS25Q9BRG1 176 aa9.91□□□□□ -0.82
LDLR-205ENST00000557933 ANKHD1Q8IWZ3 2542 aaKnown RBP9.91□□□□□ -0.82
LDLR-205ENST00000557933 A0A1W2PPI3 338 aa9.9□□□□□ -0.82
LDLR-205ENST00000557933 H0YJW9 148 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms