RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 KIR2DL5AQ8N109 375 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 STPG3Q8N7X2 389 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 UBAC2Q8NBM4 344 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 DMBX1Q8NFW5 382 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 OR4A16Q8NH70 328 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 KIR2DL5BQ8NHK3 375 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 GNPNAT1Q96EK6 184 aaPredicted RBP6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 KRTAP4-5Q9BYR2 181 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 FKBP11Q9NYL4 201 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 OR5AC2Q9NZP5 309 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 FBXL17Q9UF56 701 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 RCL1Q9Y2P8 373 aaKnown RBP6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 NACAE9PAV3 2078 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 HSPG2P98160 4391 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 IGHV3-35A0A0C4DH35 117 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 MFSD2BA6NFX1 497 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 NPIPB5A8MRT5 1133 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 MPTX1A8MV57 137 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 H0YIZ8 118 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 PITX3O75364 302 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 ACTL6BO94805 426 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 IL6RP08887 468 aaPredicted RBP6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 MED14OSP0DP75 135 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 AREGP15514 252 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 SULT1A1P50225 295 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 ATP5IP56385 69 aaPredicted RBP6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 ATP6V1FQ16864 119 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 FAM106AQ4KMX7 169 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 ZNF585BQ52M93 769 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 OR4A47Q6IF82 309 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 ALKAL2Q6UX46 152 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 RBPMS2Q6ZRY4 209 aaKnown RBP6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 MMD2Q8IY49 270 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 VKORC1L1Q8N0U8 176 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 OR1S2Q8NGQ3 325 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 LHFPL5Q8TAF8 219 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 VSTM2AQ8TAG5 236 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 OSR1Q8TAX0 266 aaPredicted RBP6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 SCGB1C1Q8TD33 95 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 EEF1AKMT3Q96AZ1 226 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 GPR146Q96CH1 333 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 SAT2Q96F10 170 aaPredicted RBP6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 SMIM8Q96KF7 97 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 SPAG8Q99932 426 aaPredicted RBP6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 ENY2Q9NPA8 101 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 CACNG5Q9UF02 275 aa6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 STRAPQ9Y3F4 350 aaKnown RBP6.01□□□□□ -1.45
CCDC88C-214ENST00000557507 MARCH11A6NNE9 402 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 UMAD1C9J7I0 102 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 FCGR3BO75015 233 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 KRASP01116 189 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 IGLV2-14P01704 120 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 REG1AP05451 166 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 SEC11BP0C7V7 166 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 MYOD1P15172 320 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 GPR183P32249 361 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 RPL27AP46776 148 aaKnown RBP6□□□□□ -1.45
CCDC88C-214ENST00000557507 POLR2GP62487 172 aaKnown RBP eCLIP6□□□□□ -1.45
CCDC88C-214ENST00000557507 ZNF124Q15973 351 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 OR2B11Q5JQS5 317 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 SLC7A5P1Q8MH63 180 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 OR52E5Q8NH55 327 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 C11orf45Q8TAV5 145 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 C2CD4CQ8TF44 421 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 MARC2Q969Z3 335 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 PINX1Q96BK5 328 aaKnown RBP6□□□□□ -1.45
CCDC88C-214ENST00000557507 C11orf68Q9H3H3 251 aaKnown RBP6□□□□□ -1.45
CCDC88C-214ENST00000557507 MAP6D1Q9H9H5 199 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 PSENENQ9NZ42 101 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 MRPL27Q9P0M9 148 aaKnown RBP6□□□□□ -1.45
CCDC88C-214ENST00000557507 APLNQ9ULZ1 77 aa6□□□□□ -1.45
CCDC88C-214ENST00000557507 IGLV11-55A0A075B6I3 123 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 CGB1A6NKQ9 187 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 CEBPZOSA8MTT3 80 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 TSPAN4O14817 238 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 DEFB4AO15263 64 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 KBTBD11O94819 623 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 IFNA17P01571 189 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 CRYGCP07315 174 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 SPCS3P61009 180 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 RPL30P62888 115 aaKnown RBP5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 EIF4EBP1Q13541 118 aaPredicted RBP5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 KLK9Q2XQG4 91 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 UQCC3Q6UW78 93 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 DPPA3Q6W0C5 159 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 LINC00336Q6ZUF6 198 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 COMMD7Q86VX2 200 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 APRG1Q8IVJ8 170 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 LILRB2Q8N423 598 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 TMEM252Q8N6L7 170 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 OR5B3Q8NH48 314 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 OR4A5Q8NH83 315 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 TMEM190Q8WZ59 177 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 HSPB7Q9UBY9 170 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 KLK9Q9UKQ9 250 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 PRNDQ9UKY0 176 aa5.99□□□□□ -1.45
CCDC88C-214ENST00000557507 RAB19A4D1S5 217 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 ZNF705EA8MWA4 302 aaPredicted RBP5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 KRBOX1C9JBD0 128 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 CFDP00746 253 aaPredicted RBP5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms