RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 CST2P09228 141 aa0.57□□□□□ -2.32
SCFD1-218ENST00000556256 DEFA3P59666 94 aa0.57□□□□□ -2.32
SCFD1-218ENST00000556256 AKIRIN2Q53H80 203 aa0.57□□□□□ -2.32
SCFD1-218ENST00000556256 MED12LQ86YW9 2145 aa0.57□□□□□ -2.32
SCFD1-218ENST00000556256 ITFG2Q969R8 447 aa0.57□□□□□ -2.32
SCFD1-218ENST00000556256 TMEM126AQ9H061 195 aa0.57□□□□□ -2.32
SCFD1-218ENST00000556256 NMNAT1Q9HAN9 279 aaPredicted RBP0.57□□□□□ -2.32
SCFD1-218ENST00000556256 BCL2L10Q9HD36 194 aa0.57□□□□□ -2.32
SCFD1-218ENST00000556256 UTP11Q9Y3A2 253 aaKnown RBP0.57□□□□□ -2.32
SCFD1-218ENST00000556256 CHCHD2Q9Y6H1 151 aaPredicted RBP0.57□□□□□ -2.32
SCFD1-218ENST00000556256 EXPH5Q8NEV8 1989 aa0.57□□□□□ -2.32
SCFD1-218ENST00000556256 NOTCH1P46531 2555 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 SBF1O95248 1867 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 TRBV19A0A075B6N1 114 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 TMEM210A6NLX4 147 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 CLDN25C9JDP6 229 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 PIGPP57054 158 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 DYNLT1P63172 113 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 RRN3P1Q2M238 152 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 LIN52Q52LA3 116 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 GDF5OSQ5U4N7 250 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 SOSTDC1Q6X4U4 206 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 OR2T10Q8NGZ9 312 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 STAG3L4Q8TBR4 150 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 TEX47Q8TBZ9 253 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 GNPDA2Q8TDQ7 276 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 FAM172AQ8WUF8 416 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 SLAMF6Q96DU3 332 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 BTF3L4Q96K17 158 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 KIFC1Q9BW19 673 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 C14orf132Q9NPU4 83 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 ACER3Q9NUN7 267 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 RASL12Q9NYN1 266 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 ROS1P08922 2347 aa0.56□□□□□ -2.32
SCFD1-218ENST00000556256 PCF11O94913 1555 aaKnown RBP0.56□□□□□ -2.32
SCFD1-218ENST00000556256 FMN1Q68DA7 1419 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 ADGRL3Q9HAR2 1447 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 ARHGEF28Q8N1W1 1705 aaKnown RBP0.55□□□□□ -2.32
SCFD1-218ENST00000556256 ZNF736B4DX44 427 aaPredicted RBP0.55□□□□□ -2.32
SCFD1-218ENST00000556256 C1QBP02746 253 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 ERP29P30040 261 aaKnown RBP0.55□□□□□ -2.32
SCFD1-218ENST00000556256 HOXA6P31267 233 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 ANP32AP39687 249 aaKnown RBP0.55□□□□□ -2.32
SCFD1-218ENST00000556256 ATP5G3P48201 142 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 SERPINB9P50453 376 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 EIF5AP63241 154 aaKnown RBP0.55□□□□□ -2.32
SCFD1-218ENST00000556256 SPA17Q15506 151 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 C4orf3Q8WVX3 66 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 PRADC1Q9BSG0 188 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 RIMBP3CA6NJZ7 1639 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 RIMBP3BA6NNM3 1639 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 RIMBP3Q9UFD9 1639 aa0.55□□□□□ -2.32
SCFD1-218ENST00000556256 FSIP2Q5CZC0 6907 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 NCOA6Q14686 2063 aaPredicted RBP0.54□□□□□ -2.32
SCFD1-218ENST00000556256 DHFRP00374 187 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 HSD11B1P28845 292 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 CAPZBP47756 277 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 RHOBP62745 196 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 REEP5Q00765 189 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 LYRM7Q5U5X0 104 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 GOLT1AQ6ZVE7 132 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 PDZD9Q8IXQ8 264 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 LINC00301Q8NCQ3 95 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 SLC30A7Q8NEW0 376 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 OR10X1Q8NGY0 326 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 PATE1Q8WXA2 126 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 CDC42SE1Q9NRR8 79 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 ECM29Q5VYK3 1845 aa0.54□□□□□ -2.32
SCFD1-218ENST00000556256 GADD45GO95257 159 aa0.53□□□□□ -2.32
SCFD1-218ENST00000556256 SRP14P37108 136 aaKnown RBP0.53□□□□□ -2.32
SCFD1-218ENST00000556256 ROMO1P60602 79 aa0.53□□□□□ -2.32
SCFD1-218ENST00000556256 HSPE1P61604 102 aaKnown RBP0.53□□□□□ -2.32
SCFD1-218ENST00000556256 KRR1Q13601 381 aaKnown RBP0.53□□□□□ -2.32
SCFD1-218ENST00000556256 MPV17LQ2QL34 196 aa0.53□□□□□ -2.32
SCFD1-218ENST00000556256 C22orf39Q6P5X5 142 aa0.53□□□□□ -2.32
SCFD1-218ENST00000556256 TEX261Q6UWH6 196 aa0.53□□□□□ -2.32
SCFD1-218ENST00000556256 CLECL1Q8IZS7 167 aa0.53□□□□□ -2.32
SCFD1-218ENST00000556256 DGCR14Q96DF8 476 aaKnown RBP0.53□□□□□ -2.32
SCFD1-218ENST00000556256 IMUPQ9GZP8 106 aa0.53□□□□□ -2.32
SCFD1-218ENST00000556256 C6orf62Q9GZU0 229 aaPredicted RBP0.53□□□□□ -2.32
SCFD1-218ENST00000556256 ARMC1Q9NVT9 282 aa0.53□□□□□ -2.32
SCFD1-218ENST00000556256 ARL2BPQ9Y2Y0 163 aa0.53□□□□□ -2.32
SCFD1-218ENST00000556256 U3KQ87 197 aa0.53□□□□□ -2.32
SCFD1-218ENST00000556256 PLXND1Q9Y4D7 1925 aa0.53□□□□□ -2.32
SCFD1-218ENST00000556256 TRGV10A0A0A0MS01 117 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 CCDC160A6NGH7 325 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 A8MWV9 139 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 M0R378 163 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 CCL25O15444 150 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 CCL16O15467 120 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 TIMM17BO60830 172 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 SERPINA1P01009 418 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 ZNF25P17030 456 aaPredicted RBP0.52□□□□□ -2.33
SCFD1-218ENST00000556256 KRTAP26-1Q6PEX3 210 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 YPEL2Q96QA6 119 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 GPER1Q99527 375 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 LINC00467Q9BRT7 94 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 C9orf16Q9BUW7 83 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 ENY2Q9NPA8 101 aa0.52□□□□□ -2.33
SCFD1-218ENST00000556256 FAM32AQ9Y421 112 aaKnown RBP0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms