RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PRCDQ00LT1 54 aa12.1□□□□□ -0.47
CUX1-215ENST00000556210 OR4F17Q8NGA8 305 aa12.1□□□□□ -0.47
CUX1-215ENST00000556210 PARD6GQ9BYG4 376 aaPredicted RBP12.1□□□□□ -0.47
CUX1-215ENST00000556210 CLEC5AQ9NY25 188 aa12.1□□□□□ -0.47
CUX1-215ENST00000556210 LAMTOR2Q9Y2Q5 125 aa12.1□□□□□ -0.47
CUX1-215ENST00000556210 GRNP28799 593 aaKnown RBP12.09□□□□□ -0.47
CUX1-215ENST00000556210 CD69Q07108 199 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 ADGRG4Q8IZF6 3080 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 TRAV8-1A0A0A6YYK1 113 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 HTR1DP28221 377 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 LY6DQ14210 128 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 TCF24Q7RTU0 167 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 TMEM186Q96B77 213 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 C2CD3Q4AC94 2353 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 ZNF785A8K8V0 405 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 K7EQM0 130 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 NBEAP1P0C6P0 100 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 KLRD1Q13241 179 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 TMEM177Q53S58 311 aa12.09□□□□□ -0.47
CUX1-215ENST00000556210 C1orf229Q6ZS94 237 aaPredicted RBP12.09□□□□□ -0.47
CUX1-215ENST00000556210 LOC389332A0A1B0GUA5 103 aa12.08□□□□□ -0.47
CUX1-215ENST00000556210 APOBEC3AP31941 199 aaPredicted RBP12.08□□□□□ -0.47
CUX1-215ENST00000556210 MC5RP33032 325 aa12.08□□□□□ -0.47
CUX1-215ENST00000556210 CSN1S1P47710 185 aa12.08□□□□□ -0.47
CUX1-215ENST00000556210 ST6GALNAC6Q969X2 333 aa12.08□□□□□ -0.47
CUX1-215ENST00000556210 FOXA2Q9Y261 457 aaPredicted RBP12.08□□□□□ -0.47
CUX1-215ENST00000556210 HCFC1P51610 2035 aa12.08□□□□□ -0.47
CUX1-215ENST00000556210 TMEM178BH3BS89 294 aa12.08□□□□□ -0.48
CUX1-215ENST00000556210 AMY1AP04745 511 aa12.08□□□□□ -0.48
CUX1-215ENST00000556210 VDAC2P45880 294 aaPredicted RBP12.08□□□□□ -0.48
CUX1-215ENST00000556210 PIP4P1Q86T03 277 aa12.08□□□□□ -0.48
CUX1-215ENST00000556210 EXPH5Q8NEV8 1989 aa12.08□□□□□ -0.48
CUX1-215ENST00000556210 HIGD1AQ9Y241 93 aa12.08□□□□□ -0.48
CUX1-215ENST00000556210 ATMQ13315 3056 aa12.08□□□□□ -0.48
CUX1-215ENST00000556210 F2RL2O00254 374 aa12.08□□□□□ -0.48
CUX1-215ENST00000556210 IL4P05112 153 aa12.08□□□□□ -0.48
CUX1-215ENST00000556210 SSBP2P81877 361 aaPredicted RBP12.08□□□□□ -0.48
CUX1-215ENST00000556210 LCN12Q6JVE5 192 aa12.08□□□□□ -0.48
CUX1-215ENST00000556210 CLEC7AQ9BXN2 247 aa12.08□□□□□ -0.48
CUX1-215ENST00000556210 POLQO75417 2590 aa12.07□□□□□ -0.48
CUX1-215ENST00000556210 TRBV9A0A0B4J1U6 114 aa12.07□□□□□ -0.48
CUX1-215ENST00000556210 F2Z2F3 143 aa12.07□□□□□ -0.48
CUX1-215ENST00000556210 TM4SF5O14894 197 aa12.07□□□□□ -0.48
CUX1-215ENST00000556210 DMXL2Q8TDJ6 3036 aa12.07□□□□□ -0.48
CUX1-215ENST00000556210 ZNF207O43670 478 aaKnown RBP12.07□□□□□ -0.48
CUX1-215ENST00000556210 ASCL5Q7RTU5 278 aa12.07□□□□□ -0.48
CUX1-215ENST00000556210 E7EQL1 145 aa12.07□□□□□ -0.48
CUX1-215ENST00000556210 FRMD6-AS1P0C7T7 363 aa12.07□□□□□ -0.48
CUX1-215ENST00000556210 CHRDL1Q9BU40 450 aa12.07□□□□□ -0.48
CUX1-215ENST00000556210 SORL1Q92673 2214 aa12.06□□□□□ -0.48
CUX1-215ENST00000556210 RPL15P61313 204 aaKnown RBP12.06□□□□□ -0.48
CUX1-215ENST00000556210 KCNS1Q96KK3 526 aa12.06□□□□□ -0.48
CUX1-215ENST00000556210 H0YJW9 148 aa12.06□□□□□ -0.48
CUX1-215ENST00000556210 ZNF324O75467 553 aaPredicted RBP12.06□□□□□ -0.48
CUX1-215ENST00000556210 CLEC3BP05452 202 aa12.06□□□□□ -0.48
CUX1-215ENST00000556210 PDLIM4P50479 330 aa12.06□□□□□ -0.48
CUX1-215ENST00000556210 SLC25A48Q6ZT89 311 aaKnown RBP12.06□□□□□ -0.48
CUX1-215ENST00000556210 OR52E5Q8NH55 327 aa12.06□□□□□ -0.48
CUX1-215ENST00000556210 FBXL7Q9UJT9 491 aa12.06□□□□□ -0.48
CUX1-215ENST00000556210 C20orf144Q9BQM9 153 aa12.06□□□□□ -0.48
CUX1-215ENST00000556210 AAMDCQ9H7C9 122 aa12.06□□□□□ -0.48
CUX1-215ENST00000556210 ABCA2Q9BZC7 2435 aa12.05□□□□□ -0.48
CUX1-215ENST00000556210 PMCHL1Q16048 86 aa12.05□□□□□ -0.48
CUX1-215ENST00000556210 TMEM133Q9H2Q1 129 aa12.05□□□□□ -0.48
CUX1-215ENST00000556210 LINC00527Q9UJ94 153 aa12.05□□□□□ -0.48
CUX1-215ENST00000556210 CENPEQ02224 2701 aa12.05□□□□□ -0.48
CUX1-215ENST00000556210 SH2D7A6NKC9 451 aaPredicted RBP12.05□□□□□ -0.48
CUX1-215ENST00000556210 ISLRO14498 428 aa12.05□□□□□ -0.48
CUX1-215ENST00000556210 TIMM23O14925 209 aa12.05□□□□□ -0.48
CUX1-215ENST00000556210 GPX1P07203 203 aa12.05□□□□□ -0.48
CUX1-215ENST00000556210 UNQ5815/PRO19632Q6UWF5 114 aa12.05□□□□□ -0.48
CUX1-215ENST00000556210 EXOC3-AS1Q8N2X6 119 aa12.05□□□□□ -0.48
CUX1-215ENST00000556210 RNASE2P10153 161 aaKnown RBP12.05□□□□□ -0.48
CUX1-215ENST00000556210 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.05□□□□□ -0.48
CUX1-215ENST00000556210 PMCHL2Q9BQD1 86 aa12.05□□□□□ -0.48
CUX1-215ENST00000556210 PEX7O00628 323 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 OR2J3O76001 311 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 HIST1H1EP10412 219 aaKnown RBP12.04□□□□□ -0.48
CUX1-215ENST00000556210 PRSS3P2Q8NHM4 247 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 SRSF12Q8WXF0 261 aaKnown RBP12.04□□□□□ -0.48
CUX1-215ENST00000556210 TRBV20OR9-2A0A075B6H5 130 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 TRAV9-1A0A075B6T8 112 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 KIR2DL5BA0A0G2JN68 375 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 KIR2DL5BA0A0G2JPC4 375 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 HIGD1CA8MV81 97 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 E7EUB6 86 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 M0QZ24 198 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 SFTPCP11686 197 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 SELENOTP62341 195 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 PPP1R27Q86WC6 154 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 KIR2DL5AQ8N109 375 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 GNB1LQ9BYB4 327 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 SCGB2A1O75556 95 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 IGHV1-8P0DP01 117 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 WT1-ASQ06250 92 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 TBR1Q16650 682 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 MORN5Q5VZ52 161 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 RITA1Q96K30 269 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 ZFP30Q9Y2G7 519 aa12.04□□□□□ -0.48
CUX1-215ENST00000556210 PMS2P5A8MQ11 134 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms