RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PPTC7Q8NI37 304 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 SLC25A40Q8TBP6 338 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 MBD3L1Q8WWY6 194 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 AQP3Q92482 292 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 GPR146Q96CH1 333 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 HOPXQ9BPY8 73 aaPredicted RBP0.4□□□□□ -2.35
SCFD1-216ENST00000555550 KIFC1Q9BW19 673 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 TRIM4Q9C037 500 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 PRNDQ9UKY0 176 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 ERGIC3Q9Y282 383 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 ARL5AQ9Y689 179 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 RP1P56715 2156 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 ECM29Q5VYK3 1845 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 COL1A1P02452 1464 aaPredicted RBP0.4□□□□□ -2.35
SCFD1-216ENST00000555550 OBSL1O75147 1896 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 EXPH5Q8NEV8 1989 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 MIA2Q96PC5 1412 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 CLDN25C9JDP6 229 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 PIRO00625 290 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 CREBL2O60519 120 aaPredicted RBP0.39□□□□□ -2.35
SCFD1-216ENST00000555550 OR4E1P0C645 316 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 SPI1P17947 270 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 PPIBP23284 216 aaKnown RBP0.39□□□□□ -2.35
SCFD1-216ENST00000555550 S100A5P33763 92 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 PIGPP57054 158 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 DEFA3P59666 94 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 TSNQ15631 228 aaKnown RBP0.39□□□□□ -2.35
SCFD1-216ENST00000555550 LIN52Q52LA3 116 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.39□□□□□ -2.35
SCFD1-216ENST00000555550 CLVS1Q8IUQ0 354 aaPredicted RBP0.39□□□□□ -2.35
SCFD1-216ENST00000555550 OR10J5Q8NHC4 309 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 ZNF418Q8TF45 676 aaPredicted RBP0.39□□□□□ -2.35
SCFD1-216ENST00000555550 SCGB3A1Q96QR1 104 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 YIPF3Q9GZM5 350 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 BOLA2Q9H3K6 86 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 EPDR1Q9UM22 224 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 HS3ST2Q9Y278 367 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 RTL1A6NKG5 1358 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 UBR2Q8IWV8 1755 aa0.39□□□□□ -2.35
SCFD1-216ENST00000555550 HERC1Q15751 4861 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 DOCK4Q8N1I0 1966 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 TRAV12-1A0A0B4J245 112 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 TRAV1-1A0A0B4J248 108 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 PMP2P02689 132 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 CSN2P05814 226 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 METTL15P1P0C7V9 234 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 SSR2P43308 183 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 CRYBA4P53673 196 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 KRR1Q13601 381 aaKnown RBP0.38□□□□□ -2.35
SCFD1-216ENST00000555550 RHEBQ15382 184 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 HACD4Q5VWC8 232 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 PHF5AQ7RTV0 110 aaKnown RBP0.38□□□□□ -2.35
SCFD1-216ENST00000555550 HIST3H2BBQ8N257 126 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 OR5A1Q8NGJ0 315 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 TMEM106AQ96A25 262 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 GINS3Q9BRX5 216 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 ULBP3Q9BZM4 244 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 COMMD5Q9GZQ3 224 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 SH3BGRL3Q9H299 93 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 TAF9BQ9HBM6 251 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 TVP23BQ9NYZ1 205 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 CKLFQ9UBR5 152 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 MYH3P11055 1940 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 MYH2Q9UKX2 1941 aa0.38□□□□□ -2.35
SCFD1-216ENST00000555550 EML6Q6ZMW3 1958 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 LAMB4A4D0S4 1761 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 ADGBQ8N7X0 1667 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 HYDINQ4G0P3 5121 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 NUP98P52948 1817 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 A0A087WSZ3 146 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 A0A087X0T9 212 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 M0R2N4 97 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 CRYZL1O95825 349 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 SMIM17P0DL12 118 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 GNG10P50151 68 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 DYNLT1P63172 113 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 BPIFA4PQ86YQ2 179 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 TMEM86AQ8N2M4 240 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 SMIM20Q8N5G0 67 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 ST6GALNAC3Q8NDV1 305 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 PSMF1Q92530 271 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 AP3S1Q92572 193 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 ZC2HC1AQ96GY0 325 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 GPX7Q96SL4 187 aaPredicted RBP0.37□□□□□ -2.35
SCFD1-216ENST00000555550 CMSS1Q9BQ75 279 aaKnown RBP0.37□□□□□ -2.35
SCFD1-216ENST00000555550 NMNAT1Q9HAN9 279 aaPredicted RBP0.37□□□□□ -2.35
SCFD1-216ENST00000555550 MED29Q9NX70 200 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 SS18L2Q9UHA2 77 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 ALPK2Q86TB3 2170 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 ZCCHC11Q5TAX3 1644 aaKnown RBP0.37□□□□□ -2.35
SCFD1-216ENST00000555550 KIAA1549Q9HCM3 1950 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 NSD1Q96L73 2696 aaPredicted RBP0.37□□□□□ -2.35
SCFD1-216ENST00000555550 CD109Q6YHK3 1445 aa0.37□□□□□ -2.35
SCFD1-216ENST00000555550 ANAPC1Q9H1A4 1944 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 ARAP1Q96P48 1450 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 CEP164Q9UPV0 1460 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 COL24A1Q17RW2 1714 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 A0A0D9SG52 128 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 H7BYZ3 331 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 TMEM256-PLSCR3K7ERE1 68 aa0.36□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms