RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 RAB11AP62491 216 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 ASAH1Q13510 395 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 ZNF846Q147U1 533 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 STPG3Q8N7X2 389 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 ZBTB8BQ8NAP8 495 aaPredicted RBP8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 STXBP6Q8NFX7 210 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 SLC35E1Q96K37 410 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 CIB3Q96Q77 187 aaPredicted RBP8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 MAP6D1Q9H9H5 199 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 EDA2RQ9HAV5 297 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 PSENENQ9NZ42 101 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 DNASE2O00115 360 aaPredicted RBP8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 SCGB2A1O75556 95 aa8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 MBPP02686 304 aaPredicted RBP8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 HNRNPCP07910 306 aaKnown RBP eCLIP8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 GATA2P23769 480 aaPredicted RBP8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 LEMD1Q68G75 181 aa8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 TMEM182Q6ZP80 229 aaPredicted RBP8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 ZNF431Q8TF32 576 aaPredicted RBP8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 GLMPQ8WWB7 406 aa8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 PBDC1Q9BVG4 233 aa8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 RABAC1Q9UI14 185 aa8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 RCL1Q9Y2P8 373 aaKnown RBP8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 STRAPQ9Y3F4 350 aaKnown RBP8.56□□□□□ -1.04
CCDC88C-208ENST00000554165 KMT2CQ8NEZ4 4911 aaKnown RBP8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 PMS2P5A8MQ11 134 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 FAM25EA8MYX2 175 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 K7EQG2 157 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 METTL15P1P0C7V9 234 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 BMI1P35226 326 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 DEFB131AP59861 70 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 ZFAND6Q6FIF0 208 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 OR8G2PQ6IF36 304 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 C16orf54Q6UWD8 224 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 ACOT7LQ6ZUV0 252 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 C12orf45Q8N5I9 185 aaPredicted RBP8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 THAP8Q8NA92 274 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 MUC7Q8TAX7 377 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 RNF125Q96EQ8 232 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 SMIM8Q96KF7 97 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 OVOL2Q9BRP0 275 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 WDR12Q9GZL7 423 aaKnown RBP8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 TMEM231Q9H6L2 316 aa8.55□□□□□ -1.04
CCDC88C-208ENST00000554165 A0A1W2PS18 150 aa8.54□□□□□ -1.04
CCDC88C-208ENST00000554165 ZNF688P0C7X2 276 aa8.54□□□□□ -1.04
CCDC88C-208ENST00000554165 LYZP61626 148 aa8.54□□□□□ -1.04
CCDC88C-208ENST00000554165 RRAS2P62070 204 aaPredicted RBP8.54□□□□□ -1.04
CCDC88C-208ENST00000554165 PAFAH1B2P68402 229 aa8.54□□□□□ -1.04
CCDC88C-208ENST00000554165 ARL16Q0P5N6 197 aa8.54□□□□□ -1.04
CCDC88C-208ENST00000554165 DEFB135Q30KP9 77 aa8.54□□□□□ -1.04
CCDC88C-208ENST00000554165 MZT2BQ6NZ67 158 aa8.54□□□□□ -1.04
CCDC88C-208ENST00000554165 TRGV9Q99603 122 aa8.54□□□□□ -1.04
CCDC88C-208ENST00000554165 SMCO3A2RU48 225 aa8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 C7orf66A4D0T2 115 aa8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 C5orf51A6NDU8 294 aa8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 KNCNA6PVL3 124 aa8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 BUB3O43684 328 aa8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 RPP30P78346 268 aaKnown RBP8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 AKR1C1Q04828 323 aa8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 TMEM14EPQ6UXP3 125 aa8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 NRARPQ7Z6K4 114 aa8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 DCANP1Q8TF63 244 aa8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 NARS2Q96I59 477 aaKnown RBP8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 BATF3Q9NR55 127 aa8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 LSM5Q9Y4Y9 91 aaKnown RBP8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 TENM2Q9NT68 2774 aa8.53□□□□□ -1.04
CCDC88C-208ENST00000554165 K7EPK0 472 aa8.52□□□□□ -1.05
CCDC88C-208ENST00000554165 SIX6O95475 246 aa8.52□□□□□ -1.05
CCDC88C-208ENST00000554165 CD5P06127 495 aa8.52□□□□□ -1.05
CCDC88C-208ENST00000554165 EIF2B2P49770 351 aaKnown RBP8.52□□□□□ -1.05
CCDC88C-208ENST00000554165 DEFB1P60022 68 aa8.52□□□□□ -1.05
CCDC88C-208ENST00000554165 ENKURQ8TC29 256 aa8.52□□□□□ -1.05
CCDC88C-208ENST00000554165 GRAMD2BQ96HH9 432 aa8.52□□□□□ -1.05
CCDC88C-208ENST00000554165 RAB40CQ96S21 281 aa8.52□□□□□ -1.05
CCDC88C-208ENST00000554165 C11orf1Q9H5F2 150 aa8.52□□□□□ -1.05
CCDC88C-208ENST00000554165 TRAV2A0A0B4J234 112 aa8.51□□□□□ -1.05
CCDC88C-208ENST00000554165 SNRPGP15A8MWD9 76 aa8.51□□□□□ -1.05
CCDC88C-208ENST00000554165 IL5P05113 134 aa8.51□□□□□ -1.05
CCDC88C-208ENST00000554165 LYL1P12980 280 aa8.51□□□□□ -1.05
CCDC88C-208ENST00000554165 APOC4P55056 127 aa8.51□□□□□ -1.05
CCDC88C-208ENST00000554165 EWSR1Q01844 656 aaKnown RBP eCLIP8.51□□□□□ -1.05
CCDC88C-208ENST00000554165 IL15RAQ13261 267 aa8.51□□□□□ -1.05
CCDC88C-208ENST00000554165 CASC10Q5T4H9 136 aa8.51□□□□□ -1.05
CCDC88C-208ENST00000554165 SIGLEC15Q6ZMC9 328 aa8.51□□□□□ -1.05
CCDC88C-208ENST00000554165 TMEM144Q7Z5S9 345 aa8.51□□□□□ -1.05
CCDC88C-208ENST00000554165 C2orf50Q96LR7 162 aa8.51□□□□□ -1.05
CCDC88C-208ENST00000554165 KIR2DL5BA0A0G2JN68 375 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 KIR2DL5BA0A0G2JPC4 375 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 HELTA6NFD8 242 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 FAM24AA6NFZ4 105 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 C3orf84H3BNL1 204 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 SPRY2O43597 315 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 TSC22D2O75157 780 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 ORM2P19652 201 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 CMC4P56277 68 aaPredicted RBP8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 TAS2R30P59541 319 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 DLK1P80370 383 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 RAB32Q13637 225 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 PSMG4Q5JS54 123 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 CYP2G1PQ6ZSU1 146 aa8.5□□□□□ -1.05
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