RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 EBI3Q14213 229 aa10.07□□□□□ -0.8
VIPAS39-206ENST00000553888 ARPC1AQ92747 370 aa10.07□□□□□ -0.8
VIPAS39-206ENST00000553888 ZNF479Q96JC4 524 aa10.07□□□□□ -0.8
VIPAS39-206ENST00000553888 NIPSNAP3BQ9BS92 247 aa10.07□□□□□ -0.8
VIPAS39-206ENST00000553888 TNFRSF19Q9NS68 423 aa10.07□□□□□ -0.8
VIPAS39-206ENST00000553888 FUT9Q9Y231 359 aa10.07□□□□□ -0.8
VIPAS39-206ENST00000553888 GOLT1BQ9Y3E0 138 aa10.07□□□□□ -0.8
VIPAS39-206ENST00000553888 I3L2K1 104 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 THAP8Q8NA92 274 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 OR4X1Q8NH49 305 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 IGHV7-81A0A0B4J1V7 117 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 IGHV1-69DA0A0B4J2H0 117 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 IGHV1-69P01742 117 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 MSMBP08118 114 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 FAM106CPP0CH98 169 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 EGR2P11161 476 aaPredicted RBP10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 PMS2P11Q13670 270 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 MRPL41Q8IXM3 137 aaKnown RBP10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 PARLQ9H300 379 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 C7orf69Q9H7B7 122 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 HIF1ANQ9NWT6 349 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 AURKAIP1Q9NWT8 199 aaPredicted RBP10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 K7EIM0 57 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 OR7C2O60412 319 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 IGHV3-23P01764 117 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 ORM2P19652 201 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 TVP23CQ96ET8 276 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 SMIM7Q9BQ49 75 aa10.06□□□□□ -0.8
VIPAS39-206ENST00000553888 HELZ2Q9BYK8 2649 aaKnown RBP10.05□□□□□ -0.8
VIPAS39-206ENST00000553888 OR5G3P0C626 314 aa10.05□□□□□ -0.8
VIPAS39-206ENST00000553888 ZNF562Q6V9R5 426 aa10.05□□□□□ -0.8
VIPAS39-206ENST00000553888 CLEC3BP05452 202 aa10.05□□□□□ -0.8
VIPAS39-206ENST00000553888 PYYP10082 97 aa10.05□□□□□ -0.8
VIPAS39-206ENST00000553888 TMEM116Q8NCL8 245 aa10.05□□□□□ -0.8
VIPAS39-206ENST00000553888 OR1B1Q8NGR6 318 aa10.05□□□□□ -0.8
VIPAS39-206ENST00000553888 SLC25A2Q9BXI2 301 aa10.05□□□□□ -0.8
VIPAS39-206ENST00000553888 TEX15Q9BXT5 2789 aa10.05□□□□□ -0.8
VIPAS39-206ENST00000553888 SCO2A0A1W2PP80 73 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 COLCA2A8K830 154 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 COX7A2P2O60397 106 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 TIGITQ495A1 244 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 LEMD1Q68G75 181 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 ZNF343Q6P1L6 599 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 DNAJC4Q9NNZ3 241 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 NDUFB4O95168 129 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 BRS3P32247 399 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 NUTF2P61970 127 aaKnown RBP10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 RHEBQ15382 184 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 FAM167A-AS1Q96KT0 104 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 FANCD2OSQ96PS1 177 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 SDF2L1Q9HCN8 221 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 SMCO4Q9NRQ5 59 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 ZNF355PQ9NSJ1 428 aa10.04□□□□□ -0.8
VIPAS39-206ENST00000553888 ADIRFQ15847 76 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 ECSCRQ19T08 205 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 C10orf113Q5VZT2 155 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 FAM24BQ8N5W8 94 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 PIFOQ8TCI5 191 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 URGCP-MRPS24S4R325 110 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 PRRC2AP48634 2157 aaKnown RBP10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 A0A096LNT2 108 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 MDFIC2A0A1B0GVS7 189 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 RNF223E7ERA6 249 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 IGLC1P0CG04 106 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 ZNF25P17030 456 aaPredicted RBP10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 USF2Q15853 346 aaPredicted RBP10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 LY6EQ16553 131 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 TMEM249Q2WGJ8 235 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 OR5AU1Q8NGC0 362 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 ATG101Q9BSB4 218 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 C2orf88Q9BSF0 95 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 G3V318 75 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 CORTO00230 105 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 ATP6V0E1O15342 81 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 LINC00305Q7Z4B0 112 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 RASL11BQ9BPW5 248 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 TECRQ9NZ01 308 aaKnown RBP10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 LINC00527Q9UJ94 153 aa10.03□□□□□ -0.8
VIPAS39-206ENST00000553888 CBY3A6NI87 242 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 TMEM250H0YL14 139 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 OR2J3O76001 311 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 NPSP0C0P6 89 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 PSG1P11464 419 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 SMIM15Q7Z3B0 74 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 TRGV9Q99603 122 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 OR2C1O95371 312 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 IGKV1-17P01599 117 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 C8orf88P0DMB2 117 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 BCL6BQ8N143 479 aaPredicted RBP10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 HIST1H2BAQ96A08 127 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 NUDT11Q96G61 164 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 MXRA5Q9NR99 2828 aa10.02□□□□□ -0.81
VIPAS39-206ENST00000553888 TRBV20OR9-2A0A075B6H5 130 aa10.01□□□□□ -0.81
VIPAS39-206ENST00000553888 IGLV11-55A0A075B6I3 123 aa10.01□□□□□ -0.81
VIPAS39-206ENST00000553888 B4DSR2 109 aa10.01□□□□□ -0.81
VIPAS39-206ENST00000553888 H3BTX0 84 aa10.01□□□□□ -0.81
VIPAS39-206ENST00000553888 NDUFB8O95169 186 aa10.01□□□□□ -0.81
VIPAS39-206ENST00000553888 PAX1P15863 534 aa10.01□□□□□ -0.81
VIPAS39-206ENST00000553888 LYZP61626 148 aa10.01□□□□□ -0.81
VIPAS39-206ENST00000553888 RPL23P62829 140 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms