RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SGMS2Q8NHU3 365 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 MED13LQ71F56 2210 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 IGHV3OR16-10A0A075B7F0 116 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 MFAP4P55083 255 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 RAB5BP61020 215 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 KLK9Q2XQG4 91 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 HSPB9Q9BQS6 159 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 C7orf69Q9H7B7 122 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 KLK9Q9UKQ9 250 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 HIGD1AQ9Y241 93 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 LY96Q9Y6Y9 160 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 C9JCJ5 164 aa20.72■□□□□ 0.91
CCDC88C-205ENST00000553403 RD3LP0DJH9 198 aa20.72■□□□□ 0.91
CCDC88C-205ENST00000553403 FAM110DQ8TAY7 271 aaPredicted RBP20.72■□□□□ 0.91
CCDC88C-205ENST00000553403 FXYD5Q96DB9 178 aa20.72■□□□□ 0.91
CCDC88C-205ENST00000553403 GGTLC3B5MD39 225 aa20.71■□□□□ 0.91
CCDC88C-205ENST00000553403 H7BYZ3 331 aa20.71■□□□□ 0.91
CCDC88C-205ENST00000553403 TOMM40O96008 361 aa20.71■□□□□ 0.91
CCDC88C-205ENST00000553403 PYYP10082 97 aa20.71■□□□□ 0.91
CCDC88C-205ENST00000553403 CD99P14209 185 aa20.71■□□□□ 0.91
CCDC88C-205ENST00000553403 HIST1H1BP16401 226 aaKnown RBP20.71■□□□□ 0.91
CCDC88C-205ENST00000553403 TMEM68Q96MH6 324 aa20.71■□□□□ 0.91
CCDC88C-205ENST00000553403 URGCP-MRPS24S4R325 110 aa20.71■□□□□ 0.91
CCDC88C-205ENST00000553403 ABCA2Q9BZC7 2435 aa20.71■□□□□ 0.91
CCDC88C-205ENST00000553403 SUMO1P63165 101 aaKnown RBP20.7■□□□□ 0.91
CCDC88C-205ENST00000553403 C5orf56Q8N8D9 126 aa20.7■□□□□ 0.91
CCDC88C-205ENST00000553403 OR5T1Q8NG75 326 aa20.7■□□□□ 0.91
CCDC88C-205ENST00000553403 MOB4Q9Y3A3 225 aa20.7■□□□□ 0.91
CCDC88C-205ENST00000553403 TRBV20OR9-2A0A075B6H5 130 aa20.7■□□□□ 0.9
CCDC88C-205ENST00000553403 CXCL1P09341 107 aa20.7■□□□□ 0.9
CCDC88C-205ENST00000553403 IGHV4-38-2P0DP08 117 aa20.7■□□□□ 0.9
CCDC88C-205ENST00000553403 YPEL3P61236 119 aaPredicted RBP20.7■□□□□ 0.9
CCDC88C-205ENST00000553403 LYZP61626 148 aa20.7■□□□□ 0.9
CCDC88C-205ENST00000553403 BRD3OSQ6XYD6 125 aa20.7■□□□□ 0.9
CCDC88C-205ENST00000553403 C1QL4Q86Z23 238 aa20.7■□□□□ 0.9
CCDC88C-205ENST00000553403 SSX3Q99909 188 aa20.7■□□□□ 0.9
CCDC88C-205ENST00000553403 HIF1ANQ9NWT6 349 aa20.7■□□□□ 0.9
CCDC88C-205ENST00000553403 MRPL27Q9P0M9 148 aaKnown RBP20.7■□□□□ 0.9
CCDC88C-205ENST00000553403 A0A0U1RQK1 487 aa20.69■□□□□ 0.9
CCDC88C-205ENST00000553403 CRYBB3P26998 211 aa20.69■□□□□ 0.9
CCDC88C-205ENST00000553403 PIFOQ8TCI5 191 aa20.69■□□□□ 0.9
CCDC88C-205ENST00000553403 A0A096LNT2 108 aa20.68■□□□□ 0.9
CCDC88C-205ENST00000553403 PPP1R2P9O14990 202 aa20.68■□□□□ 0.9
CCDC88C-205ENST00000553403 GNG7O60262 68 aa20.68■□□□□ 0.9
CCDC88C-205ENST00000553403 NDUFB8O95169 186 aa20.68■□□□□ 0.9
CCDC88C-205ENST00000553403 RPL35P42766 123 aaKnown RBP20.68■□□□□ 0.9
CCDC88C-205ENST00000553403 C2CD4CQ8TF44 421 aa20.68■□□□□ 0.9
CCDC88C-205ENST00000553403 TCEAL7Q9BRU2 100 aa20.68■□□□□ 0.9
CCDC88C-205ENST00000553403 BEX4Q9NWD9 120 aaPredicted RBP20.68■□□□□ 0.9
CCDC88C-205ENST00000553403 C21orf62Q9NYP8 219 aa20.68■□□□□ 0.9
CCDC88C-205ENST00000553403 TRBV24-1A0A075B6N3 115 aa20.67■□□□□ 0.9
CCDC88C-205ENST00000553403 TGIF2-C20orf24A0A0A6YYL0 155 aa20.67■□□□□ 0.9
CCDC88C-205ENST00000553403 UNQ5815/PRO19632Q6UWF5 114 aa20.67■□□□□ 0.9
CCDC88C-205ENST00000553403 LINC01356Q8N9X3 169 aa20.67■□□□□ 0.9
CCDC88C-205ENST00000553403 OR5B12Q96R08 314 aa20.67■□□□□ 0.9
CCDC88C-205ENST00000553403 TXN2Q99757 166 aa20.67■□□□□ 0.9
CCDC88C-205ENST00000553403 ELOVL1Q9BW60 279 aa20.67■□□□□ 0.9
CCDC88C-205ENST00000553403 ATP6V0E1O15342 81 aa20.67■□□□□ 0.9
CCDC88C-205ENST00000553403 PFN1P07737 140 aaKnown RBP20.67■□□□□ 0.9
CCDC88C-205ENST00000553403 FCGR2BP31994 310 aaPredicted RBP20.67■□□□□ 0.9
CCDC88C-205ENST00000553403 VN1R17PQ8TDU5 208 aa20.67■□□□□ 0.9
CCDC88C-205ENST00000553403 HELTA6NFD8 242 aa20.66■□□□□ 0.9
CCDC88C-205ENST00000553403 OR2J3O76001 311 aa20.66■□□□□ 0.9
CCDC88C-205ENST00000553403 S100PP25815 95 aa20.66■□□□□ 0.9
CCDC88C-205ENST00000553403 OCC1Q8TAD7 63 aa20.66■□□□□ 0.9
CCDC88C-205ENST00000553403 SLC25A39Q9BZJ4 359 aaPredicted RBP20.66■□□□□ 0.9
CCDC88C-205ENST00000553403 TMEM14CQ9P0S9 112 aa20.66■□□□□ 0.9
CCDC88C-205ENST00000553403 WI2-2373I1.2A0A1W2PRP0 233 aa20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 F8W735 103 aaPredicted RBP20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 SCGB2A1O75556 95 aa20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 GP9P14770 177 aa20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 RPS10P46783 165 aaKnown RBP20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 GALR1P47211 349 aa20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 Q56UQ5 140 aa20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 ZNF329Q86UD4 541 aa20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 ZFP82Q8N141 532 aa20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 FAM210BQ96KR6 192 aa20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 TMUB1Q9BVT8 246 aa20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 FBXL7Q9UJT9 491 aa20.65■□□□□ 0.9
CCDC88C-205ENST00000553403 TGOLN2O43493 480 aa20.64■□□□□ 0.9
CCDC88C-205ENST00000553403 ZNF491Q8N8L2 437 aa20.64■□□□□ 0.9
CCDC88C-205ENST00000553403 BIN3Q9NQY0 253 aa20.64■□□□□ 0.9
CCDC88C-205ENST00000553403 MDFIC2A0A1B0GVS7 189 aa20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 PGPEP1LA6NFU8 196 aa20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 NBEAP1P0C6P0 100 aa20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 SRP14P37108 136 aaKnown RBP20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 MYCNOSP40205 109 aa20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 ECSCRQ19T08 205 aa20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 S100A7AQ86SG5 101 aa20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 LRRC75A-AS1Q8N1F1 130 aa20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 SFRP2Q96HF1 295 aa20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 PYGO2Q9BRQ0 406 aa20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 SHANK2-AS3Q9BTD1 123 aa20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 CREBBPQ92793 2442 aa20.64■□□□□ 0.89
CCDC88C-205ENST00000553403 TMEM219Q86XT9 240 aa20.63■□□□□ 0.89
CCDC88C-205ENST00000553403 RNF125Q96EQ8 232 aa20.63■□□□□ 0.89
CCDC88C-205ENST00000553403 AURKAIP1Q9NWT8 199 aaPredicted RBP20.63■□□□□ 0.89
CCDC88C-205ENST00000553403 S4R3C0 116 aa20.63■□□□□ 0.89
CCDC88C-205ENST00000553403 H3BRN7 92 aa20.62■□□□□ 0.89
CCDC88C-205ENST00000553403 J3QLI3 93 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms